Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00454 ATGCCTGGAAGTGTTGTTGTTGAGCCCTTGGATTTGAGCGTGCAGATTCCTTACCATTTCAGGTGCCCGATTTCTCTCGAGCTCATGCGCGATCCGGTTACGGTTAGCACTGGCCAGACCTACGACCGTTCTAGTATTGAGTCATGGGTGGCCACCGGCAACACTACGTGTCCGGTCACTAGGGCTCCGCTTACGGAGTTTACGCTCATCCCTAACCATACGTTGCGACGCCTTATCCAGGAGTGGTGCGTTGCGAATCGGTCTTATGGCGTTGAGCGGATTCCGACACCGAAGCAACCGGCGGATCCGTCTTTGGTTCGGTCTCTGCTTGGCCAAGCTTCGTCGAAATCGAGTGGTTCGAGTTCGAGAATCTCGGCTGTGCGGCGGTTGAAAGGACTTGCTCGTGACTCGGAGAAGAATCGGTCGTTGATTTCTTCTCTGAATGCTCGTGAAATTCTTATTGATGTTGTGTTTTCGAATTCGGATTCGGATTCGGTTTCTCCTGATTTGAGCCGCGAATCGCTCGCGTTGCTTGTGATGTTGCCGCTCACGGAATCTGAGTGCGTTCTCGTTGCGTCTGATCCGCAACGGATTGGTTACCTGTCACATCTTCTTTTTGATTCTTCGATTGAAGTCCGAATCAATGCCGCTGCGTTGATTGAAATCGTGATTGCAGGAACTCGAGCGTCCGAGCTTCGAGGACAAATTTGCGCTATCGACGAACTATTCGAAGGCGTGGTCGAAATTCTCAGAGATCCAACGGCGTATCCGCGAGCGGTGAAGGTCGGAGTTAAGGCCTTGTTCGCTCTCTGTTTAGTGAAACAAACCAGGCACAAGGCGGTTTCCGCCGGCGCCGCCGAGATTCTCATCGACCGATTCCCCGATTTGGAGAAGTACGACGCGGAGAGAGCCCTAGCAACGATCGAACTCATTTGCAGAATTCCAACTGGTTACGACGCGTTTGCCTCTCACGCGCTCACAGTTCCGCTTTTGGTGAAAGTCATTCTGAAGATCTCAGACAGAGCAACGGAATCAGCAGTCGGAGCTCTGGTATCGCTGTGCTCTGCGTCGGAGGAGAACCGACGGGAGGCGGTGGCGGCAGGGATTTTCACACAGCTGTTGTTGCTGGTGCAAAGCGATTGTACGGAGCGAGTTAAACGGAAATCCCAAGTGCTCCTGAAGCTTCTTCGAGATTCATGGCCGCAGGATTCCGTCGGAAACTCAGACGACTATGGTTGCAGTGAAATTGTGATACCGTTTTATTAA 1266 52.37 MPGSVVVEPLDLSVQIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTEFTLIPNHTLRRLIQEWCVANRSYGVERIPTPKQPADPSLVRSLLGQASSKSSGSSSRISAVRRLKGLARDSEKNRSLISSLNAREILIDVVFSNSDSDSVSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEVRINAAALIEIVIAGTRASELRGQICAIDELFEGVVEILRDPTAYPRAVKVGVKALFALCLVKQTRHKAVSAGAAEILIDRFPDLEKYDAERALATIELICRIPTGYDAFASHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGIFTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQDSVGNSDDYGCSEIVIPFY 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2568607 2569872 - Carg08154-RA Car04g00454 145879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00454 421 Gene3D - 92 407 IPR011989 -
Car04g00454 421 MobiDBLite consensus disorder prediction 93 123 - -
Car04g00454 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 91 IPR013083 -
Car04g00454 421 MobiDBLite consensus disorder prediction 108 123 - -
Car04g00454 421 CDD RING-Ubox_PUB 20 61 IPR045210 -
Car04g00454 421 Pfam U-box domain 16 87 IPR003613 GO:0004842|GO:0016567
Car04g00454 421 PANTHER WDSAM1 PROTEIN 7 417 IPR045185 GO:0061630
Car04g00454 421 SUPERFAMILY ARM repeat 106 396 IPR016024 -
Car04g00454 421 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 417 - -
Car04g00454 421 ProSiteProfiles U-box domain profile. 15 89 IPR003613 GO:0004842|GO:0016567
Car04g00454 421 SMART Ubox_2 19 82 IPR003613 GO:0004842|GO:0016567
Car04g00454 421 SUPERFAMILY RING/U-box 13 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01385 Car-Chr1:12117447 Car04g00454 Car-Chr4:2568607 7.33E-43 dispersed
Car02g00460 Car-Chr2:3580786 Car04g00454 Car-Chr4:2568607 5.36E-52 dispersed
Car04g00454 Car-Chr4:2568607 Car20g00128 Car-Chr20:714388 6.01E-63 dispersed
Car05g00111 Car-Chr5:584617 Car04g00454 Car-Chr4:2568607 5.74E-38 dispersed
Car09g00565 Car-Chr9:3199288 Car04g00454 Car-Chr4:2568607 4.41E-21 dispersed
Car12g00549 Car-Chr12:3650535 Car04g00454 Car-Chr4:2568607 6.46E-37 dispersed
Car20g00918 Car-Chr20:9974720 Car04g00454 Car-Chr4:2568607 1.15E-49 dispersed
Car04g00454 Car-Chr4:2568607 Car04g00082 Car-Chr4:435930 1.13E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00454 - - csv:101219319 744.962