Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00473 ATGTCATTCCGAAGTATAGTTCGTGATGTGAGGGATAGCATTGGGAGCTTATCTAGACGGGGTTTCGAGGTCAAGCTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGTTAAACGATCTACACGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAACCTTCCACCTGAGCTGTTGTATGATGTCATTCGAAGACTCGAAGAGAGTGAAAGCACATGGCCTTCACGACGGAATGTCGTTGCCTGTGCTGCCGTATGTCGTTCTTGGAGAGTTATGTGCATGGAGATCGTTAAAGGCCCCGAAATTTGTGGCAAGCTTACCTTCCCTGTGTCGCTTAAGCAGCCCGGGCCACGCGATACGTCGGTACAGTGCTTCATTAAGAGGGATAAATCCAGTCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTCGTCGAAAATGGGAAGTTTCTTCTTGCTGCTAAGCGTACACGAAGAACTACCAGTACAGAGTACGTTATCTCAATGGATGCAGATAACATTTCGAGATCTAGTAGCACGTACATCGGAAAGCTGAGGTCGAATTTTCTTGGCACGAAATTCATTGTCTATGATACTCAACCACCATATGCCGCTGCTCCGCTCCCTCATCCCGGGAAAACTAGCCGTAGATTTTACTCGAAAAAGGTCTCGCCAAAAGTCCCAACTGGCAGTTACAACATAGCCCATATAAGTTACGAACTAAACGTCTTAGGCACACGAGGACCTCGAAGAATGCATTGTATAATGCATTCGATACCAGTAGCAGCTCTCGATGCAGGCGGTACAGTTCCAGGCCAACCCGAGCTCCTCCCTCCCAACTCCCTCGACGAATCGTTTCGGAGTGCATCGTTCTCCAAGACACTAGATCATTCCATGGAGTTCAGTAGTGCAAGATTTTCCGAAATCGGCCGGGCAGCATTAGATGGCGACGGAGAGGGAAAGATGAGACCTTTAGTTCTTAAAAACAAGCCCCCAAGATGGCATGAACAGCTCCAATGTTGGTGTCTCAACTTTCGCGGGCGAGTAACCGTTGCATCGGTGAAAAACTTTCAGTTGATCGCCGCAACTCAGCCATCTGCTGGCGCTCCAACACCGTCTCAACCAGGTCCTCCCGAGCACGACAAGATCATCCTACAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGACTACCGATATCCGCTCTCGGCGTTTCAAGCCTTTGCAATATGCTTGAGTAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 48.8 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWANLPPELLYDVIRRLEESESTWPSRRNVVACAAVCRSWRVMCMEIVKGPEICGKLTFPVSLKQPGPRDTSVQCFIKRDKSSLTYHLYLCLSPALLVENGKFLLAAKRTRRTTSTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIVYDTQPPYAAAPLPHPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVAALDAGGTVPGQPELLPPNSLDESFRSASFSKTLDHSMEFSSARFSEIGRAALDGDGEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPSAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2678728 2682192 - Carg08173-RA Car04g00473 145898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00473 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Car04g00473 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Car04g00473 428 Pfam F-box domain 54 100 IPR001810 GO:0005515
Car04g00473 428 Pfam Tub family 115 423 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00473 Car-Chr4:2678728 Car15g00552 Car-Chr15:3044590 0 dispersed
Car16g00326 Car-Chr16:2007663 Car04g00473 Car-Chr4:2678728 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3263 PF01167 Tub 7.30E-117 CL0395 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00473 K19600 - csv:101216314 844.728