Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00477 ATGGAGATGAATCGTATGAAGGAAGAGAACAAGATGTTGAGAAAAGAAGTGGAACAAACCATGAAAGATTACTATGATCTTGAGATGAAAATTGCTATCATTCAACAAAACAATCTCCAAAAAAAGGACTCTCACAACTTTCTACCGAGCCACGAAAATGAAAACAAGAGGATCGAAGAACCAAACAGAGAGCTCGAGCTCGGAGAAACGGCAAAGAAGAGACGAGTTCGATCGCCATCGAAGGACAACGAAATGAGAGAAAGCGAACTAGGGTTATCATTAGGGCTTCATACAAACAATGATTTGGAAGAAGATAATGATCATAAGGATCAAGAAGAAGAAACAAGAGAAAAGAGCAAAGAACATGTAACATCCAACATGAAGGCAATGCAGCAAAGCAAGCCACAAAGGCCTGAGTTGCAAGGAATGGCACCTCCACACAATAGAAAAGCTAGGGTTTCTGTGAGAGCAAGATGTGAAGCTGCCACGATGAACGATGGTTGCCAATGGCGGAAATACGGTCAAAAAATTGCGAAGGGGAATCCATGCCCTCGAGCCTACTATCGTTGCACGGTTGCACCGGGATGCCCCGTTAGAAAACAGGTGCAAAGATGCTTAGAAGACATGTCGATACTGATAACGACGTACGAAGGAACACACAACCATCCGCTTCCTGTCGGAGCCACCGCCATGGCTTCAACAGCTTCGGCAGCCGCTTCGTTTACGCTATTAGACTCCACAAATCTCCCTCTTCCAAACCTTCAAAACCCTAATAATATTCTAAACTCCTCTTCCTATTCTGCAAACCCTAACCACCCCTCCGCCGGGCTCCTCCTCAACCTCACGGCCAACAACTTCTACGCTCCGGTGGCCACCGCCTCCACCTCCGCCGCACATAATTCCTATTATCAAAGCAACTTTCAAGCTAATCTTTTTAGTCGTCCCCTTGATGGGCGGACTTGGAAATCGGCGGCGGAGGAGAAGAAGCAGCCGCTGGTTGGGGAGACTGTCTCCGCCATTGCTTCTGACCCCAAGTTTCGAGTGGCGGTGGCGGAAGCCATTTCGTCGCTCATTAACAAAGACGGCAACCTCACCGCACCCAATTCTGTCAAACGCTCTTCTTTTGGTACCGAAAAGGATGGCGACGGCGGCGATAGTGGCGGCGGGAACAACAATTGGGTTGTCCAATCGCTCTCCACCAATGGTAATATTTAA 1215 47.74 MEMNRMKEENKMLRKEVEQTMKDYYDLEMKIAIIQQNNLQKKDSHNFLPSHENENKRIEEPNRELELGETAKKRRVRSPSKDNEMRESELGLSLGLHTNNDLEEDNDHKDQEEETREKSKEHVTSNMKAMQQSKPQRPELQGMAPPHNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFTLLDSTNLPLPNLQNPNNILNSSSYSANPNHPSAGLLLNLTANNFYAPVATASTSAAHNSYYQSNFQANLFSRPLDGRTWKSAAEEKKQPLVGETVSAIASDPKFRVAVAEAISSLINKDGNLTAPNSVKRSSFGTEKDGDGGDSGGGNNNWVVQSLSTNGNI 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2691497 2693377 - Carg08177-RA Car04g00477 145902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00477 404 ProSiteProfiles WRKY domain profile. 159 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car04g00477 404 Pfam WRKY DNA -binding domain 165 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car04g00477 404 Coils Coil 3 23 - -
Car04g00477 404 MobiDBLite consensus disorder prediction 389 404 - -
Car04g00477 404 MobiDBLite consensus disorder prediction 39 150 - -
Car04g00477 404 MobiDBLite consensus disorder prediction 367 404 - -
Car04g00477 404 MobiDBLite consensus disorder prediction 45 88 - -
Car04g00477 404 MobiDBLite consensus disorder prediction 100 124 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00498 Car-Chr3:5123695 Car04g00477 Car-Chr4:2691497 4.20E-30 dispersed
Car04g00477 Car-Chr4:2691497 Car11g01502 Car-Chr11:12089406 5.35E-54 dispersed
Car16g00329 Car-Chr16:2017973 Car04g00477 Car-Chr4:2691497 4.36E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3264 PF03106 WRKY 1.50E-24 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00477 - - cmo:103496139 434.491