Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00510 ATGTTTTACAGGTCAGGTGAAACTCCTTCTGTGTTGCAGCTTCCACATGAACACTACACTGCTGAAGTAGAACCATTGGTGAGGTGTTCACAGCATATGTGCCCAATAAGGGTGCATTGGCATGTGAAACAGAGCTATACACAGTATTGGAGGGTAAAGATAACTATCACAAATCTAAACTTTGCCAAGAACTACTCTCAATGGAGCTTAGTAGTGTTGCATCCCAACTTGAGGAATATTACTCAAGTTTTCAGCTTCAACTACAGCCCTCTCAATCAATATGGTCACATAAATGACACAGGGATGTTTTGGGGGATACAGTTCTACAATGATTTGATACTCACATCAGGAGAAAGAGGGAATGTTCAAACAGAGATGCTTCTCCAAAAAGATTCAGAAATTTTCACTTTCAGAGAAGGATGGGCGTTCCCAAGAAGAATTTTGTTCAATGGGGATGAATGTGTAATGCCACCTCCAGACCAATATCCAAGGCTCCCAAATGAAGCTCACAGGGCAATGGCCATGGCCGCCACGTTCAAGAGGAATTCAGTAGATGACAGTGCAATGGAAGTTACAAGCAGCGAGTATAGCACAGGTGACCAAAATCAGTCCCGTACAAATTGA 624 42.63 MFYRSGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQTEMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFKRNSVDDSAMEVTSSEYSTGDQNQSRTN 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2887830 2888838 - Carg13198-RA Car04g00510 145935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00510 207 MobiDBLite consensus disorder prediction 186 207 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00510 - - - csv:101210777 343.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00510 Car-Chr4:2887830 Car11g00197 Car-Chr11:1137936 6.48E-73 dispersed
Car04g00510 Car-Chr4:2887830 Car14g01031 Car-Chr14:8957254 3.76E-74 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g00197 CCT,CST,ECH 100 499 COBRA Gene Family AT5G60920 81.0 8.6e-211 729.9
Car10g00271 CCT,CST,ECH 85 484 COBRA Gene Family AT5G60920 80.3 3.6e-209 724.5
Car14g01031 . 42 450 COBRA Gene Family AT5G60920 74.8 4.4e-199 691.0
Car01g00385 . 22 426 COBRA Gene Family AT5G60920 74.3 1.3e-193 672.9
Car10g00270 CST 48 445 COBRA Gene Family AT5G60920 68.4 7.4e-178 620.5
Car11g00198 CST 55 476 COBRA Gene Family AT5G60920 63.6 2.1e-172 602.4
Car01g00386 . 31 446 COBRA Gene Family AT5G60920 59.6 5.3e-152 534.6
Car13g00898 CCT,ECH 14 238 COBRA Gene Family AT5G60920 54.2 1.4e-72 270.8
Car04g00511 . 59 259 COBRA Gene Family AT5G60920 53.7 3.5e-63 239.6
Car04g00510 . 25 173 COBRA Gene Family AT5G60920 65.1 1.1e-59 228.0
Car10g00271 CCT,CST,ECH 55 481 COBRA Gene Family AT3G02210 73.5 1.0e-204 709.9
Car11g00197 CCT,CST,ECH 70 504 COBRA Gene Family AT3G02210 72.9 8.6e-204 706.8
Car14g01031 . 12 448 COBRA Gene Family AT3G02210 73.3 4.7e-202 701.0
Car01g00385 . 8 418 COBRA Gene Family AT3G02210 75.0 2.1e-197 685.6
Car10g00270 CST 20 448 COBRA Gene Family AT3G02210 66.1 3.3e-179 625.2
Car11g00198 CST 29 480 COBRA Gene Family AT3G02210 62.6 8.4e-175 610.5
Car01g00386 . 5 449 COBRA Gene Family AT3G02210 57.3 2.0e-152 536.2
Car13g00898 CCT,ECH 14 239 COBRA Gene Family AT3G02210 54.2 1.2e-72 271.2
Car04g00511 . 59 250 COBRA Gene Family AT3G02210 56.7 3.3e-62 236.5
Car04g00510 . 14 173 COBRA Gene Family AT3G02210 62.1 6.2e-61 232.3
Car10g00271 CCT,CST,ECH 55 483 COBRA Gene Family AT3G29810 74.9 2.3e-201 698.7
Car11g00197 CCT,CST,ECH 70 498 COBRA Gene Family AT3G29810 73.3 2.4e-198 688.7
Car14g01031 . 27 448 COBRA Gene Family AT3G29810 71.8 6.1e-194 674.1
Car01g00385 . 8 426 COBRA Gene Family AT3G29810 71.8 5.3e-190 661.0
Car10g00270 CST 31 429 COBRA Gene Family AT3G29810 66.9 1.6e-173 606.3
Car11g00198 CST 37 462 COBRA Gene Family AT3G29810 63.1 5.5e-171 597.8
Car01g00386 . 14 448 COBRA Gene Family AT3G29810 59.1 4.1e-150 528.5
Car13g00898 CCT,ECH 14 242 COBRA Gene Family AT3G29810 53.4 2.9e-71 266.5
Car04g00511 . 59 250 COBRA Gene Family AT3G29810 55.7 1.3e-63 241.1
Car04g00510 . 23 167 COBRA Gene Family AT3G29810 67.6 9.7e-59 224.9
Car10g00270 CST 32 356 COBRA Gene Family AT5G15630 84.0 2.3e-177 618.6
Car11g00198 CST 39 389 COBRA Gene Family AT5G15630 77.5 3.0e-172 601.7
Car11g00197 CCT,CST,ECH 83 413 COBRA Gene Family AT5G15630 74.4 9.9e-152 533.5
Car10g00271 CCT,CST,ECH 68 398 COBRA Gene Family AT5G15630 74.1 1.7e-151 532.7
Car14g01031 . 27 358 COBRA Gene Family AT5G15630 67.2 2.2e-143 505.8
Car01g00386 . 9 359 COBRA Gene Family AT5G15630 67.7 3.2e-142 501.9
Car01g00385 . 2 336 COBRA Gene Family AT5G15630 66.6 1.2e-141 500.0
Car04g00511 . 59 250 COBRA Gene Family AT5G15630 53.1 8.3e-58 221.5
Car13g00898 CCT,ECH 14 146 COBRA Gene Family AT5G15630 55.4 1.0e-47 188.0
Car10g00271 CCT,CST,ECH 55 261 COBRA Gene Family AT5G60950 58.2 3.2e-65 245.4
Car14g01031 . 25 218 COBRA Gene Family AT5G60950 62.1 4.2e-65 245.0
Car01g00385 . 18 198 COBRA Gene Family AT5G60950 61.9 7.9e-64 240.7
Car11g00197 CCT,CST,ECH 82 276 COBRA Gene Family AT5G60950 57.1 6.7e-63 237.7
Car10g00270 CST 44 224 COBRA Gene Family AT5G60950 56.4 2.7e-56 215.7
Car01g00386 . 8 206 COBRA Gene Family AT5G60950 53.5 2.8e-53 205.7
Car11g00198 CST 51 257 COBRA Gene Family AT5G60950 50.2 2.8e-53 205.7
Car14g01031 . 14 428 COBRA Gene Family AT1G09790 52.4 1.2e-133 473.8
Car10g00270 CST 36 427 COBRA Gene Family AT1G09790 53.9 3.9e-132 468.8
Car10g00271 CCT,CST,ECH 69 469 COBRA Gene Family AT1G09790 53.6 3.9e-132 468.8
Car11g00197 CCT,CST,ECH 72 484 COBRA Gene Family AT1G09790 52.0 8.6e-132 467.6
Car11g00198 CST 41 460 COBRA Gene Family AT1G09790 50.1 1.2e-128 457.2
Car01g00385 . 8 406 COBRA Gene Family AT1G09790 52.0 2.9e-127 452.6
Car04g00511 . 57 249 COBRA Gene Family AT1G09790 61.3 1.6e-69 260.8
Car04g00510 . 4 170 COBRA Gene Family AT1G09790 66.1 5.3e-65 245.7
Car06g01315 CST 38 635 COBRA Gene Family AT4G16120 66.4 1.1e-250 863.2
Car04g00880 CST 79 676 COBRA Gene Family AT4G16120 52.7 3.0e-197 685.6
Car14g01418 CST 1 465 COBRA Gene Family AT4G16120 66.7 5.3e-194 674.9
Car16g00854 CST 66 649 COBRA Gene Family AT4G16120 51.7 5.3e-194 674.9
Car14g01416 . 93 224 COBRA Gene Family AT4G16120 62.9 1.7e-43 174.9
Car06g01315 CST 13 656 COBRA Gene Family AT3G16860 60.6 1.1e-236 816.6
Car16g00854 CST 62 665 COBRA Gene Family AT3G16860 51.7 1.2e-190 663.7
Car04g00880 CST 65 673 COBRA Gene Family AT3G16860 50.5 1.6e-190 663.3
Car14g01418 CST 1 449 COBRA Gene Family AT3G16860 65.1 1.1e-178 624.0
Car14g01416 . 73 224 COBRA Gene Family AT3G16860 54.9 4.2e-42 170.2
Car06g01315 CST 16 647 COBRA Gene Family AT5G49270 59.8 7.4e-236 813.9
Car16g00854 CST 70 647 COBRA Gene Family AT5G49270 50.7 4.5e-193 671.8
Car04g00880 CST 79 676 COBRA Gene Family AT5G49270 50.7 1.9e-191 666.4
Car14g01418 CST 4 449 COBRA Gene Family AT5G49270 62.5 5.5e-175 611.7
Car14g01416 . 71 224 COBRA Gene Family AT5G49270 56.8 1.9e-45 181.4
Car04g00880 CST 2 697 COBRA Gene Family AT3G20580 57.7 3.1e-242 835.1
Car16g00854 CST 60 659 COBRA Gene Family AT3G20580 59.0 5.5e-231 797.7
Car06g01315 CST 34 652 COBRA Gene Family AT3G20580 54.4 8.6e-208 720.7
Car14g01418 CST 1 467 COBRA Gene Family AT3G20580 56.2 6.4e-163 571.6
Car04g00880 CST 67 698 COBRA Gene Family AT4G27110 61.0 4.3e-236 814.7
Car16g00854 CST 59 664 COBRA Gene Family AT4G27110 59.9 1.4e-229 793.1
Car06g01315 CST 31 652 COBRA Gene Family AT4G27110 52.4 3.8e-200 695.3
Car14g01418 CST 1 459 COBRA Gene Family AT4G27110 54.3 2.1e-158 556.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010841 0 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00510 Car_Chr04 FPKM 40.770115 43.661552 32.970188 30.376673 50.744602 76.802887 49.138206 45.498161 46.732433 40.668709