Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00518 ATGGGTTGCGTTTGTTGTAAGCCCTCTGCTATAGAGGATAGCAAGGAAAGTCCGAGGGAGAGGCTGTCGAACAAGACCTCGTCCGACCTGCAGGTGGCAAGAGTGACTTCGTCATCAAGGGAAGAAGCTTATCGATCTAAAGATCATCATGATGGTAATGATGTAAGAGTGACATTGATTAACAAGCAGGTGAATGGGTCGGGTCGATTGCAGAGTGAGATTTTTGAGAGGAAGAGGGAGAAGATGGAGCATATGGCTGCTCAACATCCTTCAATGGGGAGAATTCCGAAGGCAGCAGAGGGAGACCAAATTGCTGCTGGCTGGCCGCCGTGGCTGGCTGCAGTTGCTGGAGAGGCAATCAGAGGGTGGCTACCCCGACGAGCTGATTCTTTTGAGAAATTGGATAAAATTGGTCAAGGGACTTATAGTAATGTATATAGGGCTCGTGACCTTGACCAAAAGAAAATTGTTGCTTTGAAGAAAGTAAGATTCGACAACCTGGAACCTGAGAGCGTCCGCTTTATGGCTAGGGAAATTCACATATTGCGTAGGCTCGATCATCCAAATGTGATAAAGCTGGAGGGTCTAGTTACGTCAAGGATGTCTTGCAGCCTCTATCTTGTATTTGAGTACATGGAACACGATTTGGCAGGACTTGCTTCACACCCTGGTGTGAAGTTTACAGAGGCACAGGTTAAATGTTACATGCAACAACTTTTGCGTGGACTTGATCATTGTCACAGTCACGGAGTTCTGCATCGTGATATAAAGGGTTCCAACCTTTTAATCGACAATAATGGCGTCTTGAAAATTGCAGACTTTGGTTTAGCAAGTTTTTTTGATATCCACCAAAATCAGCCGCTGACAAGTCGGGTTGTAACTCTTTGGTATAGACCGCCTGAGCTTTTACTCGGTGCTACTTATTACGGTACAGCTGTAGATTTGTGGAGTACTGGCTGCATACTTGCTGAATTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACAGAGGTGGAGCAGCTACATAAAATATTTAAACTCTGTGGCTCTCCTTCAGAGGATTATTGGAGAAAATCAAGGCTGCCACATGCAACGATATTTAAGCCCCAACAACCCTATAGACGCTGCGTTGCTGACACGTTTAAGGATTTCCCTGCACCAGCTTTAGCTCTCATTGAGATGTTACTCTCTATAGATCCTGCTGATCGTGGCTCTGCCGCTCTTGCCCTTAAAAGCGAATTTTTTTCAACGAAGCCACTTCCTTGTGATCCTTCGAGCTTGCCGAAGTATCCTCCGAGCAAAGAATTTGATGCCAAGATAAGGGATGAGGAAGCTAGAAGACAAGGAGCGGTAGGAAGCAAGGGACACCGACATGACCTGCAAAGGAAAGATAGAGAGTCTCGAGCTGTCCCTGCACCTGACGCCAATGCCGAGTTAGTCTCATCAATGCAGAAAAGACAATCCAATTCAAAGAGCCGGAGTGAAAAGTTTAATCCACACCCAGAAGAAGCTTCTGGCTTTCCAATTGATCCACCTAGACCATCACAAGGAGCAGAACGAACGGATTCTCAGGTGCGTCATCCTAAGAAAGCCTCACATTCAGGGCCACTTGCTCAGCGGGCCGCTTGGGTAAAGGCTAGTAAGAACCCAGATGACGCTCCGAAAATCTCAACCGGGGCCGATACGTTCACAACTTCAGGACTAGTAGCACCTAGAAGAAGTATGCTGGGGGAAAAGTCTGACGCTTCACAAGGAGAGGTTAAAAAACTAATTGGCAGGTTTCCTGGTTCCTTCAAGGAAACCTCGGAATCATCGATGCTACCCGACCAGAAGTTCTCAAATCACAGTATCGTAGGCTCACACGACAAAGAGAGGTGCAGCACCAAAGACCCTATAGTTGTGGGTTATGGCTCAAAAGGTCATAAGATTCATTACTCTGGTCCATTACTGGTTCCTTCTGGCAACATGGAGCAAATGTTGAAGGACCACGATCGTCATATCCAAGAGGCAGTAAGACGAGCTCGGCTCGACAAGGCCAAGGCACGAAAGGTTCAAGTTGACGGGAAACAGATGTCGACAAATTCATTATTCGTCTCCGGTCGTTAA 2106 46.77 MGCVCCKPSAIEDSKESPRERLSNKTSSDLQVARVTSSSREEAYRSKDHHDGNDVRVTLINKQVNGSGRLQSEIFERKREKMEHMAAQHPSMGRIPKAAEGDQIAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDIHQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVADTFKDFPAPALALIEMLLSIDPADRGSAALALKSEFFSTKPLPCDPSSLPKYPPSKEFDAKIRDEEARRQGAVGSKGHRHDLQRKDRESRAVPAPDANAELVSSMQKRQSNSKSRSEKFNPHPEEASGFPIDPPRPSQGAERTDSQVRHPKKASHSGPLAQRAAWVKASKNPDDAPKISTGADTFTTSGLVAPRRSMLGEKSDASQGEVKKLIGRFPGSFKETSESSMLPDQKFSNHSIVGSHDKERCSTKDPIVVGYGSKGHKIHYSGPLLVPSGNMEQMLKDHDRHIQEAVRRARLDKAKARKVQVDGKQMSTNSLFVSGR 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2917917 2923185 + Carg13190-RA Car04g00518 145943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00518 701 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Car04g00518 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Car04g00518 701 MobiDBLite consensus disorder prediction 445 560 - -
Car04g00518 701 MobiDBLite consensus disorder prediction 8 52 - -
Car04g00518 701 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00518 701 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00518 701 MobiDBLite consensus disorder prediction 445 471 - -
Car04g00518 701 MobiDBLite consensus disorder prediction 24 39 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g00518 Car16g00361 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00780 Car-Chr1:4830404 Car04g00518 Car-Chr4:2917917 0 dispersed
Car02g00082 Car-Chr2:545090 Car04g00518 Car-Chr4:2917917 0 dispersed
Car04g00518 Car-Chr4:2917917 Car20g00175 Car-Chr20:952919 5.75E-18 dispersed
Car09g01138 Car-Chr9:11884689 Car04g00518 Car-Chr4:2917917 0 dispersed
Car20g00013 Car-Chr20:77129 Car04g00518 Car-Chr4:2917917 1.18E-88 dispersed
Car04g01945 Car-Chr4:12574842 Car04g00518 Car-Chr4:2917917 0 transposed
Car04g02441 Car-Chr4:19443442 Car04g00518 Car-Chr4:2917917 4.54E-110 transposed
Car06g00743 Car-Chr6:5090310 Car04g00518 Car-Chr4:2917917 0 transposed
Car16g00361 Car-Chr16:2244419 Car04g00518 Car-Chr4:2917917 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88772 PF00069 Pkinase 4.90E-69 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00518 - - csv:101222182 1326.61