Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00533 ATGGTGAGCTTGAGCTTCTTGAACACTTGCGTGGGGGAATCACCGATCATTGGAACTGCCGCGTGTTCTCCGGTGCCGTTTTCCGGTTTCAATAGTCTCCACAATCGATCATCATCTTCATCTGCTTTTTATTCTTCTTCATTTTCAATGGCTGCTCAATCGGTCGGCGAAATGGACGGCGGAAATTTCCCTTCCGACCTCGCCTACCAGTCCGGCTTCAACAATCATTTCTCGTCGGAGGCGATTCCCGGTGCTCTTCCTCAATTGCAAAACAGTCCTCTGATATGCCCTTACGGCCTCTATGCCGAGCAGATCTCTGGCACTTCCTTCACATCGCCTCGCAAAGTCAACATGTGCAGTTGGCTGTATAGGATTAAGCCGTCGGTCACGCATGAACCGTTTAGGCCTCGTTTGCCTAAAAACGAGAAGTTGATCAGTGAATTTAATGCGTCAAATTGTTCATCGACTCCGACTCAGCTAAGGTGGAGACCGGCGGAGGTTCCTGATTCACCGCTGGATTTCGTTGATGGTCTGTACACTGTTTGTGGAGCCGGCAGTTCGTTTCTTCGGCATGGTTTTGCTATTCACATGTACACAGCCAATAAGTCAATGGAGAACTGTGCGTTCTGTAATGCTGACGGCGACTTCTTGATAGTCCCTCAGAGTGGAAGTGAGTTATTGTTGGTAGTTACTTTCATTGAAAATTATGAACGTAGTGGGCTTCAATCTGAGTATTTTTATTCGGAAAATCTATCTCTGCTGTATATTGAATCTGAAGGAAACTATATTCCTGTCTTAAAAGTTCTAAGGAAACAGGATCAAACTCTTATAGAATATTCTTATTCCATAGGGCTGTGGATTATTACCGAGTGTGGAAGACTGGAAGTTTCTCCTGGTGAAATAGTGGTTTTACCTCAAGGTTTTCGCTTTGTTGTTTATCTGCCTGATGGTCCATCACGTGGCTACGTAGCTGAGATTTTTGGCAGTCATTTTCAGCTTCCTGATCTTGGACCAATAGGTGCTAATGGTCTTGCTGCACCACGGGATTTTCTTGCCCCTGTAGCCTGGTTTGAAAATATTTCTCGTCCTGGTTACACAATTGTGCAAAAATATGGTGGGGAATTGTTTACTGCGATACAGGACTTTTCTCCCTTTAATGTAGTTGCCTGGCATGGTAATTATGTTCCCTATAAGTACGATCTTAGTAAGTTCTGCCCTTACAATACTGTGTTATTTGATCACAGTGATCCATCAATAAATACAGTATTAACGGCACCAACTGATAAACCCGGAGTAGCGTTACTCGACTTTGTCATTTTCCCCCCAAGATGGCTCGTCTCTGAACACACATTCCGTCCTCCATATTACCATCGCAACTGCATGAGTGAATTTATGGGTCTCATATATGGAGGCTACGAGGCAAAAGCTGATGGGTTCCTTCCTGGGGGTGCCAGCCTTCATAATTGCATGACTCCCCATGGCCCTGATACTAAAACATACGAGGCCACTATTGCCCGAGGAAACGAGGCTGGACCTTATCGAATCACCGACACAATGGCATTTATGTTTGAATCAAGTCTGATCCCTCGCGTATGCTCTTGGGCTCTGGAGTCTCCATGCATGGATCATGACTACTACCAATGCTGGATAGGATTGAAATCTCATTTCACAAGTGAAGGAACAACTAGAGACATGGATCCACAGAAGGTAAAAACTGACGTTGAAAATGGAAGACAGACTGTGTAG 1746 45.02 MVSLSFLNTCVGESPIIGTAACSPVPFSGFNSLHNRSSSSSAFYSSSFSMAAQSVGEMDGGNFPSDLAYQSGFNNHFSSEAIPGALPQLQNSPLICPYGLYAEQISGTSFTSPRKVNMCSWLYRIKPSVTHEPFRPRLPKNEKLISEFNASNCSSTPTQLRWRPAEVPDSPLDFVDGLYTVCGAGSSFLRHGFAIHMYTANKSMENCAFCNADGDFLIVPQSGSELLLVVTFIENYERSGLQSEYFYSENLSLLYIESEGNYIPVLKVLRKQDQTLIEYSYSIGLWIITECGRLEVSPGEIVVLPQGFRFVVYLPDGPSRGYVAEIFGSHFQLPDLGPIGANGLAAPRDFLAPVAWFENISRPGYTIVQKYGGELFTAIQDFSPFNVVAWHGNYVPYKYDLSKFCPYNTVLFDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVSEHTFRPPYYHRNCMSEFMGLIYGGYEAKADGFLPGGASLHNCMTPHGPDTKTYEATIARGNEAGPYRITDTMAFMFESSLIPRVCSWALESPCMDHDYYQCWIGLKSHFTSEGTTRDMDPQKVKTDVENGRQTV 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2996088 2999870 + Carg13174-RA Car04g00533 145958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00533 581 Pfam Homogentisate 1,2-dioxygenase N-terminal 280 401 IPR046452 -
Car04g00533 581 Pfam Homogentisate 1,2-dioxygenase N-terminal 68 224 IPR046452 -
Car04g00533 581 MobiDBLite consensus disorder prediction 559 581 - -
Car04g00533 581 MobiDBLite consensus disorder prediction 559 573 - -
Car04g00533 581 Pfam Homogentisate 1,2-dioxygenase C-terminal 402 556 IPR046451 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00533 K00451 HGD, hmgA; homogentisate 1,2-dioxygenase [EC:1.13.11.5] - csv:101206356 803.127
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g149 . . . . . . . . . Cmo04g00599 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1041 Cone15ag1030 . . . . . . . . . . . . . . . Cma04g00562 . Car04g00533 . . Cpe01g00507 . . . . . . . Cla07g00942 Cam07g1018 Cec07g1088 Cco07g1066 Clacu07g0987 Cmu07g0983 Cre07g1357 . . Chy07g00956 Cme07g01326
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009963 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00533 Car_Chr04 FPKM 0.0 0.0 0.0 0.0 6.370916 13.314947 6.903585 0.0 0.0 0.0