Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00544 ATGTCTCTTCGCAGATCGTTTCTCTCTCGGAGGTTTTCCTCAAAGTCGTTGTATAGAGTTCCAAATGGTGTAGGAGATGGAATTCTTCGAGTTGCTTCGTCGGAGGTCGAAGATGGCTCTGGTCAGCCCAGCGGTGGCCGGATGCAACCTGAATCTGCTTGGTCCTCCATGCTACCGGAGCTTCTTCGGGAGATCATTCAGCGGGTTGAGGCTTCTGAGGATAGTTGGCCTAACCGCCAGAACGTTGTTTCGTGTGCTTGTGTCTGTAAGCGTTGGCGGGATATTACTAAGGAGGTCGCCAGGGCCGCCCCTCTTTCCGGGAAAATTACTTTCCCTTCCTGCCTCAAACAGCCTGGACCATGCGATCCTCCGCATCAGTGTCTTATAAAAAGGAACAAGAAGACTTCAACATTTTACCTTTATCTTGCCCTTGCACCATCATTTACAGATAAGGGAAAATTCCTCTTAGCTGCTCGAAGATATAGGCATGGATCTCATACTGAGTATATAATATCTCTTGATGGTGAAGACCTATCCCAAGGAAGCAATGCTTATGTGGGGAAGTTAAGCTCCGATTTTCTTGGTACCAATTTTACAATTTATGATAGCCAGCCACCACATAACGGTGCAAAGCCATCGAGCAGTAAATCAAGCCGCCGCTTCGCAAGCAAGCAAATTAGCCCACAAGTTTCTGCGGGGAACTTTGAAGTTGGGCAAGTCTCTTACAAATTTAATCTTTTGAAATCAAGAGGCCCAAGGAGAATGATATGCTCTCTGAAGTGCCCAGTATCAGAAGACACTGGCACCAGCAAACCTTATGAGGACTCGAAGATGAAGAAATCCGAGTCCTTTTCTCCTTCATCTGGGTCGACAATCTTAAGAAACAAGGCCCCTAGATGGCATGAGCACCTGCAATGCTGGTGCTTGAATTTTCACGGTCGGGTGACGGTAGCATCCGTTAAAAACTTTCAACTTGTCGCTGCTGTTGACCATAGCCAGCCAGGAGTTAAAGGGGACGAAGAAACAGTCCTCCTACAGTTCGGAAAGGTAGGCGACGACACCTTTACTATGGATTATAGGCAGCCATTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACGAGCTTCGGCACGAAGTTGGCATGCGAGTAG 1152 47.66 MSLRRSFLSRRFSSKSLYRVPNGVGDGILRVASSEVEDGSGQPSGGRMQPESAWSSMLPELLREIIQRVEASEDSWPNRQNVVSCACVCKRWRDITKEVARAAPLSGKITFPSCLKQPGPCDPPHQCLIKRNKKTSTFYLYLALAPSFTDKGKFLLAARRYRHGSHTEYIISLDGEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPVSEDTGTSKPYEDSKMKKSESFSPSSGSTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVAAVDHSQPGVKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3059573 3063962 + Carg13163-RA Car04g00544 145969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00544 383 MobiDBLite consensus disorder prediction 264 290 - -
Car04g00544 383 ProSitePatterns Tub family signature 1. 311 324 IPR018066 -
Car04g00544 383 Pfam Tub family 115 378 IPR000007 -
Car04g00544 383 MobiDBLite consensus disorder prediction 203 223 - -
Car04g00544 383 Pfam F-box domain 54 98 IPR001810 GO:0005515
Car04g00544 383 ProSitePatterns Tub family signature 2. 368 383 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00544 Car-Chr4:3059573 Car08g01080 Car-Chr8:7360312 1.65E-135 dispersed
Car16g00401 Car-Chr16:2475846 Car04g00544 Car-Chr4:3059573 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3269 PF01167 Tub 1.60E-101 CL0395 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00544 K19600 - csv:101211968 633.639