Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00546 ATGACCGAGCCCAAGCCCGATTCCGATCAACTATCTCCGTTTTTCCCTAAATCTCATCGTTCCGGTGCCGACGACCGGAACCCACTTATGGATTTCGATCTCGATTTGGATATTCCTTGGCCGTTGGATCAAACCCCTTTGTTTTCAACTTCCGATCATCTTGCTTCGCCTCTTTGGGCCTTCTCTGAAGCCGATGATGGCGACGATTCCAAATTTGCTGCCTATGCTTGCTCTGTTCTTGGTACTTCCAATTTGAATTCCGTACCGCAAAAGCCGATCGAGAATCACAAGTTTAAGATTCTTCCCGCTCCGTCCGAGAATCCAGATGGGTATTGCTTGATCAAGGAAAAAATGGCGCAAGCTCTTCGGTACATTAAGGATTTGTCCGACCAGCAAGTTCTAGCTCAGGTTTGGGCACCTGTAAAGAATGGTGACAAGGTTGTACTTTCGACTTCCGGGCAACCGTTTGTTCTTGATACGCAGAGCAACGGGCTTCATCGGTATAGGTTGGTCTCTTTGACGTATATGTTCTCTTTGGACACTGAGTTGGATGGATCTCTCGGTCTCCCTGGTCGTGTTTTTCAACAAAAGTTGCCTGAATGGACTCCAAATGTGCAGTATTACTCGAGCAAGGAGTATTCACGACTTAGGCATGCTCTTGATTATAATGTTCAGGGAACTTTGGCTTTGCCTGTTTTCGACCCTTCGGGGCAGTCTTGTCTTGGTGTTCTCGAGCTAATCATGACTTCACCGAGGATCAATTATGCACCTGAGGTGGACAAAGTCTGTAAAGCTCTGCAGGCTGTTAATCTAAAAAGTTCAGAGATTTTGGATCGTCCAAATATCCAGATTTGCAACGAAGGCCGACAGAATGCGCTGGCTGAAATCTTGGCCGTACTCACCGTTGTTTGTGAAACCCATAACTTACCATTGGCTCAAACCTGGGTTCCGTGCAGGCACCGAAACGTGCTCGCCAATGGTGGAGGTTTGAAAAAAAGCTGTACTAGCTTTGATGGTAGTTGTATGGGGCGGATCTGTATGTCTGCAACTGAAGTAGCATCCTATGTTGTTGATGCTCACAAGTGGGGATTTCGCGAGGCGTGTTTAGAACACCATTTACAAAAGGGTCAAGGGGTTTCGGGGAGAGCGTTTTCGTCTCACAGCTCGTGTTTTTGTGGAGACATCACTCAATTCTGCAAGAACGAATACCCTTTGGTACACTACGCACTCATGTTCGGATTAAAGAGCTGTTTTTCGATCTGCTTACGGAGCAAGTTTACTGGAGACGACGAGTACATTCTTGAATTCTTTCTGCCACCGAGCCTCGTTGATTATCAGGAACAAAAGACTTTGTTGGGTGCAATGATGGCAACAATGAAGCAGCATTTCTACACTCTCAAAGTTGCCTCTGGAATCAAACTCGAGGAAGGAGGAATTGTCGAAGTCGTTCAAGCATCAAGAAACGGAGGGTTCGAATCAAGACTTGAATGTATTCATATTCCACCCGAGTCTGATGCCATGCCGAACACGGGAGAGGTAGCTGCCTTAGAAACATTACAACAACGTTCTTTAATGGTTCACGATGCCCCAAAGGACGAAAACAATACTGTTCGGGACAGGGAAAGCGACAACCCCGTTCCTTGTGTCCAGAATAAGGAAGTGAAAAAAACGTCCAAAAGGAAGCGCGGAAAAGCCGAGAAGTCGATTAGTCTGGACGTTCTTCAACAATATTTTGCTGGTAGTCTTAAGGATGCTGCTAAAAGCCTTGGCGTTTGTCCGACAACAATGAAGCGTATCTGTAGGCAACACGGGATCTCACGGTGGCCATCTCGAAAGATCAATAAGGTGAATCGCTCTCTTTCAAAGCTAAAACGCGTCATCGATTCCGTTCAAGGGAATGAAGGAACTTTTGGAATGTCTTCTCTTGCTACAAGTCCACTTCCTGTTGCAGTTAGTTCGAGTTCTCATCCGTTAACTCCGGACGGGTCGAATCAAAATTTTTTTTTTGCTTCTCAACCCTCTGATCCTCAACGTAAAGAAACAAACACCTCAGAAGCACAGACAAACAACACACAGGCTAGACTGAAAGATCAATTACTCAGGGGAGTGTCGAACCCGGAAGAACTGTTTCACGAGCAGAATGGATCTCTAATGAAGCTCGGAAATGGCTTCAACAATTTTAGAACAGGAAGCGGATCTCGGGACGAGAGCACCGGGACACCTACATCTCATGGTTCTTGCCAAGGTAGTCCTGCAAATGAGAGTAATCCCCTTTCTATTCACCACCAAGAACAATGTGTAAGAAGAGGCTCTCCTGAAGCAGCAGCCTTCCATCCAATCGACAAACCGAACACATCGGCGCGTGCTTGTCCAGTTCCCGATACGCTTCTGATGGTTGAGCCGAAGGAACCGTTTGGAGGAATGCTGATTAAGGATGCAGGAAGCTCTAAGGACTTAAAGAATCTTTGCGCTTCGGTTGCCGATGCCGTTCTCGACGATCAAGTACCCAAATTTTGTTGGCCCAGACCTTCTGATATAGCTATGAGACAACCTATGGAGTCTGTTTGTCACACAGTCCCTCATATATCAGCAAGGCAAGAACCAAGTAGAATGACTATCAAGGCCACTTATAAGGACGATATCATTCGGTTTCAAATTTCCACGTGCACCGGTATTGTGGAGTTACGAGAGGAAGTAGCAAAGAGATTGAAACTAGATGTCGGTACGTTCGATATCAAATACATGGACGACGATCGTGAATGGGTTCTTACTGCTTGCGACGCAGACCTACAAGAGTGTGTAGATATCTCAAAAGCATCAGGTAGCAACATAATAAGATTGTTGGTTCATGATTTATCTGTCAATCTTGGGAGTTCTTGTGAGAGTACTAGGGAGTGA 2898 45.96 MTEPKPDSDQLSPFFPKSHRSGADDRNPLMDFDLDLDIPWPLDQTPLFSTSDHLASPLWAFSEADDGDDSKFAAYACSVLGTSNLNSVPQKPIENHKFKILPAPSENPDGYCLIKEKMAQALRYIKDLSDQQVLAQVWAPVKNGDKVVLSTSGQPFVLDTQSNGLHRYRLVSLTYMFSLDTELDGSLGLPGRVFQQKLPEWTPNVQYYSSKEYSRLRHALDYNVQGTLALPVFDPSGQSCLGVLELIMTSPRINYAPEVDKVCKALQAVNLKSSEILDRPNIQICNEGRQNALAEILAVLTVVCETHNLPLAQTWVPCRHRNVLANGGGLKKSCTSFDGSCMGRICMSATEVASYVVDAHKWGFREACLEHHLQKGQGVSGRAFSSHSSCFCGDITQFCKNEYPLVHYALMFGLKSCFSICLRSKFTGDDEYILEFFLPPSLVDYQEQKTLLGAMMATMKQHFYTLKVASGIKLEEGGIVEVVQASRNGGFESRLECIHIPPESDAMPNTGEVAALETLQQRSLMVHDAPKDENNTVRDRESDNPVPCVQNKEVKKTSKRKRGKAEKSISLDVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIDSVQGNEGTFGMSSLATSPLPVAVSSSSHPLTPDGSNQNFFFASQPSDPQRKETNTSEAQTNNTQARLKDQLLRGVSNPEELFHEQNGSLMKLGNGFNNFRTGSGSRDESTGTPTSHGSCQGSPANESNPLSIHHQEQCVRRGSPEAAAFHPIDKPNTSARACPVPDTLLMVEPKEPFGGMLIKDAGSSKDLKNLCASVADAVLDDQVPKFCWPRPSDIAMRQPMESVCHTVPHISARQEPSRMTIKATYKDDIIRFQISTCTGIVELREEVAKRLKLDVGTFDIKYMDDDREWVLTACDADLQECVDISKASGSNIIRLLVHDLSVNLGSSCESTRE 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3077219 3081069 + Carg13161-RA Car04g00546 145971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00546 965 Pfam RWP-RK domain 569 616 IPR003035 -
Car04g00546 965 MobiDBLite consensus disorder prediction 532 565 - -
Car04g00546 965 Pfam PB1 domain 871 951 IPR000270 GO:0005515
Car04g00546 965 MobiDBLite consensus disorder prediction 648 693 - -
Car04g00546 965 ProSiteProfiles PB1 domain profile. 870 952 IPR000270 GO:0005515
Car04g00546 965 MobiDBLite consensus disorder prediction 724 762 - -
Car04g00546 965 MobiDBLite consensus disorder prediction 724 788 - -
Car04g00546 965 MobiDBLite consensus disorder prediction 1 28 - -
Car04g00546 965 ProSiteProfiles RWP-RK domain profile. 555 636 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00546 - - - csv:101212500 1617.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01583 Car-Chr1:13115602 Car04g00546 Car-Chr4:3077219 2.28E-11 dispersed
Car04g00546 Car-Chr4:3077219 Car09g00046 Car-Chr9:230493 2.81E-12 dispersed
Car12g00604 Car-Chr12:4022894 Car04g00546 Car-Chr4:3077219 7.47E-11 transposed
Car16g00470 Car-Chr16:2984946 Car04g00546 Car-Chr4:3077219 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car04g00546 . 169 965 NLP Transcription Factor Family AT1G64530 51.2 2.1e-209 726.1
Car16g00470 . 266 1005 NLP Transcription Factor Family AT4G24020 54.2 2.1e-201 699.5
Car04g00546 . 248 965 NLP Transcription Factor Family AT4G24020 53.5 2.6e-196 682.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3270 PF00564 PB1 9.00E-17 CL0072 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00546 Car_Chr04 FPKM 2.041152 2.13998 1.563974 2.325237 2.566126 1.778265 6.152473 1.522268 0.873084 1.166992