Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00551 ATGTTCTTGCAAAGAAACTACCTAAGCGGAGTGATTCCCTTTGAGCTGGGAAACCTTTCTGAGTTGGAAATGTTAGATGTTTCAAGCAACTCACTTAGTGGAAATATTCCAACATCCCTCGGGAATTTGGATAAGCTCGCTATTCTCAATGTGTCATCAAATTTTTTAATTGGACCAGTACCTTCTGATGGTGTTCTTTCCAAGTTTTCAGAGTCTTCCTTTGTTGGAAATCGTGGTTTATGTGGCAAACAAGTTAGTGTCACTTGCAAAGACAACAACACTGGATCTGGATCAAATTCTGAATCCCCAGGCTCAGGCCAAAATCAAATGAGGAAGAAGTACTCTGGTCGACTACTCATAAGTGCATCAGCTACAGTGGGGGCACTACTACTTGTTGCTCTCATGTGTTTCTGGGGCTCCTTTCTTTTTAAAAGATTTGGAAGAAATGAAAAGAAGGGTCTTGCAAAGAATGTCGGTGGAGGCGCATCAGTTGTGATGTTTCATGGAGACTTGCCATACTCTTCAAAAGACATTATGAAGAAGTTGGAAACCTTGAATGAGGAACACATCATCGGCTCTGGGGGTTTTGGAACAGTTTACAGACTTGCAATGGATGATGGCAATGTATTTGCTTTGAAAAATATTGTAAAGATAAATGAGGGGTTCGATCACTTTTTTGAGAGGGAACTTGAAATTCTTGGAAGCTTAAAGCATCGGTACCTTGTTAATTTGAGAGGATATTGCAATTCTCCCACCTCGAAATTGTTGATTTATGATTACCTATCTGGGGGCAGCCTTGATGAGGCCCTTCATGAAAGATCCGAGCCATTAGATTGGGACACACGCTTGAATATTATATTTGGAGCAGCAAAAGGGCTTGCCTATCTGCACCATGATTGTTCACCCAGAATCATACATCGGGATATCAAGTCGAGCAACATATTACTTGATGGCAATCTGGATGCTCGAGTTTCTGACTTTGGACTTGCTAAGCTTCTGGACGATGATAAATCTCACATTACAACCATTGTTGCCGGAACATTTGGTTATTTGGCCCCTGAATACATGCAAAGTGGTAGAGCAACTGAAAAGACCGATGTATATAGTTTTGGAGTCCTGGTACTTGAAGTACTGAGTGGAAAACGACCGACAGATGCATCATTTATTGAGAAAGGCCTGAACATTGTTGGCTGGCTAAATTTTCTTCTCACGGAGAATAGGCAACGAGAAATAGTTGATTCACAATGTGAAGGAGTGCAGACAGAAACTCTTGACGCATTGCTCAGGCTTGCTATTCAGTGTGTTTCTTCTAGTCCAGATGATCGGCCGACCATGCACCGAGTCGTCCAGTTCTTTGAGTCTGAGGTTATGACGCCATGTCCAAGTGACTTCGATGATTCCAATTCTGATTAA 1413 41.9 MFLQRNYLSGVIPFELGNLSELEMLDVSSNSLSGNIPTSLGNLDKLAILNVSSNFLIGPVPSDGVLSKFSESSFVGNRGLCGKQVSVTCKDNNTGSGSNSESPGSGQNQMRKKYSGRLLISASATVGALLLVALMCFWGSFLFKRFGRNEKKGLAKNVGGGASVVMFHGDLPYSSKDIMKKLETLNEEHIIGSGGFGTVYRLAMDDGNVFALKNIVKINEGFDHFFERELEILGSLKHRYLVNLRGYCNSPTSKLLIYDYLSGGSLDEALHERSEPLDWDTRLNIIFGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLDDDKSHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLLTENRQREIVDSQCEGVQTETLDALLRLAIQCVSSSPDDRPTMHRVVQFFESEVMTPCPSDFDDSNSD 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3104515 3110621 - Carg13156-RA Car04g00551 145976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00551 470 ProSitePatterns Protein kinases ATP-binding region signature. 191 213 IPR017441 GO:0005524
Car04g00551 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Car04g00551 470 ProSiteProfiles Protein kinase domain profile. 185 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00551 470 Pfam Protein kinase domain 187 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00551 Car-Chr4:3104515 Car11g00135 Car-Chr11:764403 7.54E-170 dispersed
Car04g00551 Car-Chr4:3104515 Car09g00658 Car-Chr9:3862978 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88774 PF00069 Pkinase 4.60E-47 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00551 - - csv:101205992 893.649