Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00576 ATGCTTCGCAGTTTAATCCCTCATTCCCCCATCAATTCCGCTTCCAATTCCATGTCGTCCAAGCGCCCCGCCGACGCCGACTCCGCCGCCGACGACCCTTCCTCTAAGCGTCTCAATTCCGGTCCCTCCAACTTCCACGCCGGCGCCTCCGGGGAGAAGGACGTCGAGGAGGAAGAAGAGCTTCCGCTTGTCGATGGCAGCGACTCCACTGGTTTGAGACTGCTAGGTCTTCTTCTTCAATGTGCTGAGTGCGTCGCTATGGATAATCTACAAGAGGCGAACGATCTCTTGCCGGAGATCTCGGAGCTCTCCTCGCCGTTTGGTACCTCACCTGAGCGCGTCGGCGCGTACTTTGCCCACGCGCTTCAGGCTAGAGTGATAAGCTCTTGCTTGGGAACCTACTCGCCCTTGTCGATTAGGACGCTGAATCAAACTCAGTCGCAGAGGATGTTTAATGCTCTGCAATCCTACAATTCGATCAGTCCCTTAATCAAGTTCTCTCACTTCACTGCTAATCAAGCCATTTTCCAAGCCTTGGACGGCGAGGATCGAGTCCACGTTATCGATCTCGACGTAATGCAAGGTCTTCAATGGCCTGGATTGTTCCACATCCTCGCCTCCCGCTCGAAGAAAATCCAATCCCTACGAATATCCGGCTTCGGATCCTCTTCGGAATTGCTCCAATCCACCGGGCAGAGACTCGCCGATTTCGCAACCTCCCTCGGCCTCCCGTTTGAGTTCCATCCAGTGGAAGGCAAAATCGGAAACCTAACGGACCCAAAGCAACTGGAATTGAGGGCAGGCGAGGCGGTGGTAGTGCACTGGATGCACCATTGCTTGTACGACATAACCGGCAGCGATATAGGTACGCTGAGACTTCTTTCAACCCTAAAACCTAAACTGATCACCATTGTGGAACAGGATCTGAGCCATGGGGGCAGTTTTCTAGGAAGATTCGTAGAAGCTCTGCATTACTACAGCGCGTTATTCGACGCGCTGGGTGATAGTTTGGCGATGGATAGCGTGGAAAGGCATGTGGTGGAGCAGCAATTGTTGGGATGTGAGATTAGGAACATTATCGCCGTCGGTGGACCCAAAAGAACTGGAGAAGTGAAGGTGGAGAGATGGGGGGATGAACTGAAACGGGTCGGGTTCGGAGCCGTCTCTCTTGGGGGAAACCCAGCTGCTCAGGCCAGTCTGCTTCTGGGCATGTTCCCCTGGAAAGGGTATACTCTGGTTGAAGAAAATGGGTGCCTGAAACTCGGATGGAAGGACCTTTCCCTGCTCACAGCCTCTGCCTGGCAGCCCTGTGATTGA 1317 53.83 MLRSLIPHSPINSASNSMSSKRPADADSAADDPSSKRLNSGPSNFHAGASGEKDVEEEEELPLVDGSDSTGLRLLGLLLQCAECVAMDNLQEANDLLPEISELSSPFGTSPERVGAYFAHALQARVISSCLGTYSPLSIRTLNQTQSQRMFNALQSYNSISPLIKFSHFTANQAIFQALDGEDRVHVIDLDVMQGLQWPGLFHILASRSKKIQSLRISGFGSSSELLQSTGQRLADFATSLGLPFEFHPVEGKIGNLTDPKQLELRAGEAVVVHWMHHCLYDITGSDIGTLRLLSTLKPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDSLAMDSVERHVVEQQLLGCEIRNIIAVGGPKRTGEVKVERWGDELKRVGFGAVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPCD 438
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 3285365 3286681 - Carg13129-RA Car04g00576 146001
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car04g00576 438 MobiDBLite consensus disorder prediction 8 23 - -
Car04g00576 438 Pfam GRAS domain family 76 435 IPR005202 -
Car04g00576 438 ProSiteProfiles GRAS family profile. 65 435 IPR005202 -
Car04g00576 438 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 43 435 IPR005202 -
Car04g00576 438 PANTHER SCARECROW-LIKE PROTEIN 23 43 435 - -
Car04g00576 438 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00224 Car-Chr3:3531067 Car04g00576 Car-Chr4:3285365 1.89E-160 dispersed
Car04g00576 Car-Chr4:3285365 Car08g00236 Car-Chr8:1494111 7.88E-111 dispersed
Car04g00576 Car-Chr4:3285365 Car07g01146 Car-Chr7:6895184 8.82E-161 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3275 PF03514 GRAS 6.90E-116 CL0063 Car TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00576 - - bhj:120092974 744.191