Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00595 ATGCATGATCAAGATTGCTGTTCCATCCCTGGTGAAGGGAAATCCATGCCCGAATTTACCTCGGCTTCTCTTGATCTAGGTATCTCTGCTGGTTCTCCCGATATTCCAGTCAATAACTACTGTGATTCACCAGAAATCTTGGATATTAAGTGTTGTAAACTTATGGAATCTCCCGTAGAGCTTTCCTTTGAAAATAGCTTTACGGGTGTTGAGGTTAGCCATAACCAGATAACCCCATCTGTTAGATTTTCCAATTTGTGTGAAACATATGAGCAAGAACTGTCTCCAGAATCTTCCTTTGAGTTGGCTCCTTCTCCAGCTACCAGTTCTTTTAAATCTGAAGAACTCCTTCAAGCTATAAGTGTCAATGCAGGTGCTCCAAGTGATGCTGTGGATTTGGATGGGATAAACTATGTGGAAGACAATTGGTATAAGGGTGGTGATACCATTAGGTCTGATGAAATTGAGCATCCTCTGTATCAAACGGCTCGTTTTGGGGATTTTTGTTACAATTTCTCATCATTGGAACCTGGGAATTATGTTGTTGACCTGAATTTTGCTGAAATTGTATTTACCAATGGCCCACCTGGTATGAGGGTGTTTGATGTCTATTTGCAAGACCAGAATGTTGTTTCTGGCCTGGATATATATGCTCGTGTCGGTGGGAATAAGCCTCTCATTATATCTGACCTCAAAACTTCTGTCGAAGTAAAAGATTTAACCATTAGATTTGAAGGACAGATGGGCAGGCCAATTGTTTGTGGTATTTCTGTGAGGAAAGATCTCCCTTCAAATAGAAAAGAAGTTGAACTGCTCGAAGAAATGGGATCATCTCAACTATCCAACGGGGAGATGTCCAAAGATAGTGATGACTTGATAGTAAAAGAGAAGTACCTAGTGCTGCAAAAGGATCTTGAGCTCATGAAGAATGAGCTAGCAGCAGCAAGGAAGAACATGGAGGAACTTAGAAAGGAAAACAATCAAAAGAGTAGAGAATGTCAAGAAGCTTGGAAGTCTTTAAATGAGCTGCAAAACGAGCTCATGCGCAAGTCAATGCATGTTGGATCTCTTGCTTTTGCCATTGAGGGACAGGTGAAAGAGAAGGGCAAATGGTTTTCTTCGTTGAGAGACCTTACCAGAAAAGTAAAGATTATGAAAATAGAAAACATCAAATTATCAGAGGAGGCATTGGCTTTCAAGAACTGCTGTGTAGATATGAATGAAATGACTTCTAAAATTCAGACAGCATTTAAACAGCAATTAGATTTGCAAGAAACCCTGAAGACTAAATTTGTTGAAGGAGCTAAGGAACGGAAAGAACTCTACAATAAGATGTTGGAGTTGAAAGGAAACATTAGGGTCTTTTGTAGGTGTAGGCCTTTAAATTCAGAAGAGATTGGTTCTGGAGCTTCAATGGTTGTTGATTTTGAGTCGGCCAAAGATGGCGAGTTGATTGTTAAGTCCAATGGGGCTCCCAGAAGAATCTTTAAGTTTGATTCTGTATTTGGTCCTCAGGCAAATCAAGGAGATGTGTTTGAAGATACTGCGCCATTTGCGGCTTCAGTTCTAGATGGTTACAATGTTTGTATATTTGCATATGGCCAAACCGGGACTGGGAAAACTTTTACAATGGAGGGCACTGAGGGAGCTCGTGGAGTCAATTATAGGATTCTTGAGGAGCTGTTTCGCTTGACAAAGGAACGCCAGAAGCTACATCGATACAAAGTATCTGTTAGTGTCTTGGAAGTGTATAATGAGCAAATACGGGACTTGCTAGTCTCAGCATCTCAGTCAGGAAATGGTTCAAAAAGGCTCGAAGTAAGACAAATCAGTGAAGGAATACATCATGTTCCTGGCATGGTAGAGGCACCTGTCGACAACATGAGTGAAGTTTGGGAAGTTTTACAAACTGGCAGCAATGCAAGAGCTGTTGGTTCAACCAATTGTAATGAGCACAGCAGCCGATCCCACTGCATACACTGTGTGATGGTGAAGGGGGAGAATTTGCTAAATGGGGAATGCACAAGTAGCGAACGGATTGCTAAAGTAGAAGTACAGGGAGAACGACTCAAGGAAACACAAAATATTAATAGATCTCTTTCTGCACTTGGTGATGTAATATCCGCTCTCGCCACAAAAAGCCCTCATGTTCCTTACAGTCCCAATGAAAATGACTTGAATGAGACTCTTTGCTCATTAAACTTTGCGAGCAGAGTAAGAGGAATTGAGTTGGGTCCTGCTAAGAGACAACTTGATATGTCTGAATTCCACAAATGCAAACAGATGGCTGAGAAAACAAAGCTGGATATGAAGAGTAAAGATCTGCAGATCAGAAAGATGGAAGAAACAATGCATGGATTAGACCTGAAGATGAAGGAAAAAGATCAGAAAAACAAAAGTCTACAGGATAAGGTCAAAGAACTTGAAGCTCAACTTCTTGTTGAAAGAAAGCTAGCACGTCAACATGTTGATGCCATAGTAACAGAGCAGATACAGCAGCAGCAGCATATGAAAACTGAATCAGAAGACCACAAGTCTGCACCGGCGAGGCCACAACTTGCTGCGAGTCGACCATTAGGTAGTCAAAAAATTCTCCATGGATCATCATATAACAGCATACTAGGAAAGAAGCAAATAAATCTCACTCGCCCACTAACTGAGAACAACGGCTCCAAACCGTCATTTCCCTTTCCTTCAGTGGATGGTGCCATCAAGTACCCTGATTCCACAGAGAAGGAAAACAACCCAGAGATGGCTGAGCAATCTCTTGTGCCAACAAGGAGGACCGGAAGAGCCTCTATTTGCCCAATGGCAGCTCGACGTGTACCGATGGCCCTTGCTCCTAGGAGAATCTCCCTAACTCCTCAACCAAGCATACCGAGCTCAACTCATCTCCCATCACCAATGCTGCCATTGCCACCATCATATCAAGTTGAGAAGATAGAGAAAGGCGATGGATCAGAGGACAGTAACTTGGCTGAACAGGCGGCACAATGCGAGAGTCCTAAAGAGAGAAAGTATGGAGGTAAGAAGTTGAGCAACATGTTGAGACGAAGCCTTCAAAAGAAGAAGGTACAACAAACGAAGTCTCCAGTGCAACAACAGGTGAGAAGAGGTGGTGGTATCAATCTGGGGTTGGAGAAAGTCAGGGTGTCGATCGGAAGTCGGGGACGGATGGCGGCGGCGCACAGGGTGTTGTTGTTAGGAGGAGGAGGAGGCAATGGTAGAAGAGGAGTTGCAAAAGAAACTCAAAGTAAGAAGGAAAAGGAGAGGGGTTGGAATATTGGAACAGCAGTAGGGAGAACT 3306 42.83 MHDQDCCSIPGEGKSMPEFTSASLDLGISAGSPDIPVNNYCDSPEILDIKCCKLMESPVELSFENSFTGVEVSHNQITPSVRFSNLCETYEQELSPESSFELAPSPATSSFKSEELLQAISVNAGAPSDAVDLDGINYVEDNWYKGGDTIRSDEIEHPLYQTARFGDFCYNFSSLEPGNYVVDLNFAEIVFTNGPPGMRVFDVYLQDQNVVSGLDIYARVGGNKPLIISDLKTSVEVKDLTIRFEGQMGRPIVCGISVRKDLPSNRKEVELLEEMGSSQLSNGEMSKDSDDLIVKEKYLVLQKDLELMKNELAAARKNMEELRKENNQKSRECQEAWKSLNELQNELMRKSMHVGSLAFAIEGQVKEKGKWFSSLRDLTRKVKIMKIENIKLSEEALAFKNCCVDMNEMTSKIQTAFKQQLDLQETLKTKFVEGAKERKELYNKMLELKGNIRVFCRCRPLNSEEIGSGASMVVDFESAKDGELIVKSNGAPRRIFKFDSVFGPQANQGDVFEDTAPFAASVLDGYNVCIFAYGQTGTGKTFTMEGTEGARGVNYRILEELFRLTKERQKLHRYKVSVSVLEVYNEQIRDLLVSASQSGNGSKRLEVRQISEGIHHVPGMVEAPVDNMSEVWEVLQTGSNARAVGSTNCNEHSSRSHCIHCVMVKGENLLNGECTSSERIAKVEVQGERLKETQNINRSLSALGDVISALATKSPHVPYSPNENDLNETLCSLNFASRVRGIELGPAKRQLDMSEFHKCKQMAEKTKLDMKSKDLQIRKMEETMHGLDLKMKEKDQKNKSLQDKVKELEAQLLVERKLARQHVDAIVTEQIQQQQHMKTESEDHKSAPARPQLAASRPLGSQKILHGSSYNSILGKKQINLTRPLTENNGSKPSFPFPSVDGAIKYPDSTEKENNPEMAEQSLVPTRRTGRASICPMAARRVPMALAPRRISLTPQPSIPSSTHLPSPMLPLPPSYQVEKIEKGDGSEDSNLAEQAAQCESPKERKYGGKKLSNMLRRSLQKKKVQQTKSPVQQQVRRGGGINLGLEKVRVSIGSRGRMAAAHRVLLLGGGGGNGRRGVAKETQSKKEKERGWNIGTAVGRT 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3393345 3398636 + Carg13110-RA Car04g00595 146020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00595 1102 Coils Coil 777 818 - -
Car04g00595 1102 MobiDBLite consensus disorder prediction 952 1007 - -
Car04g00595 1102 Coils Coil 375 395 - -
Car04g00595 1102 MobiDBLite consensus disorder prediction 1080 1094 - -
Car04g00595 1102 Pfam Kinesin motor domain 457 719 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car04g00595 1102 Coils Coil 298 332 - -
Car04g00595 1102 MobiDBLite consensus disorder prediction 832 851 - -
Car04g00595 1102 MobiDBLite consensus disorder prediction 1067 1102 - -
Car04g00595 1102 MobiDBLite consensus disorder prediction 908 927 - -
Car04g00595 1102 ProSiteProfiles Kinesin motor domain profile. 451 719 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car04g00595 1102 Pfam Malectin domain 120 256 IPR021720 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00595 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101222343 1746.1
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g00595 Car16g00421 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00595 Car-Chr4:3393345 Car05g01069 Car-Chr5:10315133 1.73E-138 dispersed
Car16g00421 Car-Chr16:2627164 Car04g00595 Car-Chr4:3393345 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g956 . . . . Bpe09g00290 . . Bma13g00898 Cmo16g00505 . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0984 . . . . . Blo10g00686 . . . . . . . . . Cma04g00636 Cma16g00466 Car04g00595 Car16g00421 . Cpe01g00574 . . . . . . . Cla07g01010 Cam07g1087 Cec07g1159 Cco07g1137 Clacu07g1061 Cmu07g1052 Cre07g1428 . . Chy07g01045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003005 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00595 Car_Chr04 FPKM 4.575234 5.903412 5.627741 6.882582 7.893935 6.896765 8.424169 10.341741 7.802538 9.219519