Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00599 ATGGCTTCTTCTTCTTCAATGCCGAAGATTCTCTCTGTAAATAGGAATTATGGTGTAAGAAACAGAGTATCTTGTTCGCTTCATACTCCTTCTATAATTCAAATTCCTAAGAGGTCTCAGACGGCATTTCGATCGCCCATCAAGATCGCCGTGCCAAAACCTGAACCTGTAGCTGCTCCTTCCGTGTCTTCGCCCGCCAAGGAGTGGAATTTCTTGCAGCAAGCTGCGGCTATGGCGCTCGATGCGGTTGAGGATGCTCTGGTTTCGATGGAGAAGAAGCATTCCTTGCCGAAGACGGCTGACCCTTCTGTTCAAATTGCTGGGAATTTTGCTCCTGTGCCGGAGCAGCCTGTTCGGAAGGTGTTGCCGGTTACCGGGAAAGTTCCCGACTGCATTCGGGGGGTTTATGTGCGAAACGGAGCCAACCCACTTCATGAACCGGTTTCCGGTCATCACTTGTTTGACGGCGATGGGATGGTCCATGCTGTGGAGTTCACTGAGTGCGGTAGAGTTAGTTACGCTTGCCGGTTTACGGAGACAGAACGGCTGGTTCAGGAGCGGGCTTATGGCCGGCCGGTTTTCCCGAAAGCTATTGGGGAACTCCATGGCCACTCTGGGATAGCTCGGTTGATGCTTTTCTATGCTAGAGGATTATTTGGGCTTGTCGATCATAGCCATGGAATCGGCGTCGCCAACGCCGGTTTGGTTTACTTTAACGGCCGGCTTCTTGCCATGTCGGAGGACGATTTGCCGTACCAAATCCGTGTCACTCCGTCTGGGGATTTGAAAACCGTTGGCCGGTTTGATTTCGACGGTCAATTGAAATCCACAATGATAGCTCACCCAAAGCTCGATCCTGTTTCCGGCGAGATGTTCGCTTTGAGCTACGACGTAATCCAGAAACCATATTTGAAATACTTCAAATTCTCGGCGGAGGGGGAGAAATCACCGGACGTTGAAATTCCCCTGCCTCAGCCGACGATGATGCACGATTTCGCAATTACGGAAAAATTTGTTGTAATTCCAGACCAGCAGGTGGTTTTCAAGTTGCCGGAGATGATCCGCGGGGGATCTCCGGTGGTCTACGACAAAGAAAAAACCTCCCGATTTGGGATTTTGGACAAAAATGCCACAGACGCCAACGCCATTAAATGGATTGAAGCTCCCGATTGCTTCTGTTTCCATCTCTGGAACGCTTGGGAAGAACCAGAGAGTAACGAAATCGTCGTAATTGGATCGTGCATGACGCCACCGGACTCCATTTTCAACGAATGTGAAGAGAATTTGAAATCCGTCTTATCGGAAATTCGCCTGAATCTCTCCACCGGAAAATCAACTCGTCGGCCGATCATCGCTGAAACAGAGCAAGTGAACTTAGAAGCCGGAATGGTGAACCGAAATCAATTAGGGCGAAAAACCCAGTTCGCTTATCTTGCTCTGGCTGAACCATGGCCAAAGGTTTCTGGATTCGCGAAGGTCGATCTCTCCACCGGAGAAATCAGAAAGTATCTCTACGGCGCAGACAGGTACGGCGGCGAGCCTCTGTTTCTTCCCAGAGAAGGAGCAACGGCGGAGGACGATGGGCACATCTTAGCCTTCGTTCACGACGAGAAGGAATGGAAATCAGAGCTGCAGATCGTAAACGCCATGACTTTGGAGCTTGAAGCTACTGTAAAGCTTCCTTCTCGAGTTCCTTACGGCTTCCATGGAACTTTCATAAGCTCCAAGGATTTGCAGAAGCAGAAACGGTAA 1752 50.06 MASSSSMPKILSVNRNYGVRNRVSCSLHTPSIIQIPKRSQTAFRSPIKIAVPKPEPVAAPSVSSPAKEWNFLQQAAAMALDAVEDALVSMEKKHSLPKTADPSVQIAGNFAPVPEQPVRKVLPVTGKVPDCIRGVYVRNGANPLHEPVSGHHLFDGDGMVHAVEFTECGRVSYACRFTETERLVQERAYGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDHSHGIGVANAGLVYFNGRLLAMSEDDLPYQIRVTPSGDLKTVGRFDFDGQLKSTMIAHPKLDPVSGEMFALSYDVIQKPYLKYFKFSAEGEKSPDVEIPLPQPTMMHDFAITEKFVVIPDQQVVFKLPEMIRGGSPVVYDKEKTSRFGILDKNATDANAIKWIEAPDCFCFHLWNAWEEPESNEIVVIGSCMTPPDSIFNECEENLKSVLSEIRLNLSTGKSTRRPIIAETEQVNLEAGMVNRNQLGRKTQFAYLALAEPWPKVSGFAKVDLSTGEIRKYLYGADRYGGEPLFLPREGATAEDDGHILAFVHDEKEWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFISSKDLQKQKR 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3428565 3430316 - Carg13106-RA Car04g00599 146024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00599 583 Pfam Retinal pigment epithelial membrane protein 111 573 IPR004294 GO:0016702
Car04g00599 583 PANTHER 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED5, CHLOROPLASTIC-RELATED 61 581 - -
Car04g00599 583 PANTHER BETA-CAROTENE DIOXYGENASE 61 581 IPR004294 GO:0016702
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00599 K09840 NCED; 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51] - csv:101219505 1015.37
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g00599 Car16g00417 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01267 Car-Chr3:9734256 Car04g00599 Car-Chr4:3428565 0 dispersed
Car04g00566 Car-Chr4:3214088 Car04g00599 Car-Chr4:3428565 1.20E-100 dispersed
Car04g00599 Car-Chr4:3428565 Car07g00090 Car-Chr7:575442 0 dispersed
Car04g01204 Car-Chr4:6923610 Car04g00599 Car-Chr4:3428565 2.44E-29 transposed
Car17g00913 Car-Chr17:7512066 Car04g00599 Car-Chr4:3428565 2.48E-108 transposed
Car17g00102 Car-Chr17:598620 Car04g00599 Car-Chr4:3428565 0 transposed
Car16g00449 Car-Chr16:2837784 Car04g00599 Car-Chr4:3428565 2.57E-120 wgd
Car16g00417 Car-Chr16:2589729 Car04g00599 Car-Chr4:3428565 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g944 . . . . Bpe09g00281 . . . . Cmo04g00691 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00797 Bda12g00789 . Bpe03g00857 . . . . . . Cma16g00460 Car04g00599 Car16g00417 Cpe14g00387 Cpe01g00581 . . . . . . . Cla07g01003 Cam07g1078 Cec07g1150 Cco07g1128 Clacu07g1053 Cmu07g1043 Cre07g1420 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000637 4 3 3 4 4 3 5 3 3 2 3 3 5 3 3 5 3 5 6 3 3 3 3 3 3 3 3 3 3 1 101
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00599 Car_Chr04 FPKM 0.732283 1.519284 0.518545 0.0 1.169044 1.620241 1.168703 0.0 0.0 0.0