Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00605 ATGATGTCTGTCATATGCCAGAGCCTTGATTTTGGAAGGTATGTTTTGGATCATGTTGCTTGTGGCTGTTCTTCCAATACTCCATTGGATCGATGTGCGGTGAGGAGTTATATTAAACCGTGTTCTAAGGGTAGAAAGACGCGACACCAAACTCGAACTTTGATTTGTGCCCGACGAAACATTGGGCAGTGCAGAGTGTTTTCAACTACCCAACCGGAAACTGTATTGAATGGCATTACTGGTGGTTCTCAACCATTCTTGGAACTGAGGAAGGAGCCCAGAACCCCAATCTCGTCGACAAATTTGTTTGAAGTTGTAGCCGATGATCTCCAGAAGCTTAACCAGAATCTTCTGTCTATGGTTGGTGAGGAGAACCCAGCTTTGGTATCTGCTGCTCAGCGGATATTTGGTGCTGGAGGGAAGAGGATGAGACCAGCTCTAGTATTCCTAGTGTCAAGAGCAACGGCCGGATTAGTTGGGTTAGAGGAACTCACTGTGGAGCATCGACGTTTGGCAGAGATCATTGAAATGATCCACACTGCAAGCTTGATACACGACGATGTATTAGACGATAGCGATATGAGAAGAGGGAAGGAAACCTTGCACCAATTATACGGTACCAGAGTGGCAGTGCTAGCTGGAGATTTCATGTTTGCACAGTCATCATGGTGTCTTGCTAACCTCGAAAATCTCGAAGTCATTAAGCTTATCAGTCAGGTTATTAAAGATTTTGCAAGTGGTGAAATAAAGCAGGCATCAAGCCTGTTTGATTGTGAAGTTGAACTTGAAGAGTATCTGACCAAAAGCTATTATAAAACAGCCTCCTTGATTGCTGCTAGCACGAAAGGTGCTGCGATCTTTAGCGGGGTTGATCGTGATACTACTGAGAAGATGTACGAGTATGGAAGGAATCTCGGTCTTTCGTTCCAAATTGTCGACGACATATTGGACTTTACACAATCAACAAAGCAGCTCGGAAAGCCAGCAGGAAGTGATCTGGCTAAAGGAAATCTTACAGCTCCAGTTATATTTGCTCTTGAGAGAGAGCCTAGACTGAAAGAAATTATCGAAACCGAATTCAGTGAGCCGGGGTCGCTAGAAGAAGCGATTGAATTAGTCAAGAGCAGGGGTGGCATTGAAAGAGCACAGGAATTGGCAAAACAGAAGGCAGATCTTGCTATCCAAAACCTACAATGCCTTCCAGAAGGAGTGTTTCGGTACGCACTCGAGGATATGGTGACGTTTAATCTAGAACGGATCGATTAG 1266 44.71 MMSVICQSLDFGRYVLDHVACGCSSNTPLDRCAVRSYIKPCSKGRKTRHQTRTLICARRNIGQCRVFSTTQPETVLNGITGGSQPFLELRKEPRTPISSTNLFEVVADDLQKLNQNLLSMVGEENPALVSAAQRIFGAGGKRMRPALVFLVSRATAGLVGLEELTVEHRRLAEIIEMIHTASLIHDDVLDDSDMRRGKETLHQLYGTRVAVLAGDFMFAQSSWCLANLENLEVIKLISQVIKDFASGEIKQASSLFDCEVELEEYLTKSYYKTASLIAASTKGAAIFSGVDRDTTEKMYEYGRNLGLSFQIVDDILDFTQSTKQLGKPAGSDLAKGNLTAPVIFALEREPRLKEIIETEFSEPGSLEEAIELVKSRGGIERAQELAKQKADLAIQNLQCLPEGVFRYALEDMVTFNLERID 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3471979 3476185 - Carg13100-RA Car04g00605 146030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00605 421 ProSitePatterns Polyprenyl synthases signature 2. 305 317 IPR033749 -
Car04g00605 421 ProSitePatterns Polyprenyl synthases signature 1. 183 197 IPR033749 -
Car04g00605 421 Pfam Polyprenyl synthetase 128 372 IPR000092 GO:0008299
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00605 K05356 SPS, sds; all-trans-nonaprenyl-diphosphate synthase [EC:2.5.1.84 2.5.1.85] - csv:101214140 739.184
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g00605 Car16g00425 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00605 Car-Chr4:3471979 Car07g00741 Car-Chr7:3820575 6.07E-35 dispersed
Car03g01284 Car-Chr3:9797442 Car04g00605 Car-Chr4:3471979 1.69E-80 transposed
Car16g00406 Car-Chr16:2512967 Car04g00605 Car-Chr4:3471979 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g6 . . . . Bpe09g00274 Bpe08g00996 Bma10g00467 . . Cmo04g00701 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1012 . . . . . Blo07g01003 Blo10g00715 . . . Bpe03g00882 Bma07g01157 . . . . . . Car04g00605 Car16g00425 . Cpe01g00589 . . . . . . . Cla07g00994 Cam07g1069 Cec07g1141 Cco07g1119 Clacu07g1042 Cmu07g1034 Cre07g1410 . . . .
Vvi19g847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00678 . . Car04g00605 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006158 2 1 2 1 2 1 2 1 1 2 0 1 1 1 2 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00605 Car_Chr04 FPKM 0.378616 1.197369 5.433124 4.529806 1.980152 2.590318 1.260305 1.7839 1.566683 1.064514