Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car04g00611 | ATGAAGATTCAGTGCAATGTCTGCGAAATGGCTGAAGCCACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGCGATGAGAACATTCATGCCGCCAACAAGCTCGCTAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCGTCTCAGATGCCCAGATGCGACATCTGCCAGGAAGCTAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCAATACACACAGCAAATGCTTACGTAACGGGTCATCAACGCTTTCTGCTCACTGGTGTGAAAGTCGCACTCGAGCCAACCGACCCCGTTCCTTGTTCTTCCATAGCTAATTCACATTCTAGAGAGATATCAACCAAGACAAAAGTTAGACCACCGTCTGATAAGGAATTCTCGATGCCTTCGTCTGGTGAACTCAGCAGAAGCCTGTCTGTTCAAGGTGGATCTGATGACTTAATGACAAATAGAACATTGCTTACTGGAGATTCTGCTTCTGGTGGCTTTTCACAATGGCAAATAGATGAACTCATTAATCTGACTGGATTCAATCAGAATTATGGGTTTATGGATAACGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGACTCCGACTCATCACCAAGTTTGAGAGCTGCTGATGTTGAACTCGACGATGACGATGAATGCTCGGGTCACATTCCAGAGGCTTCCTGGACTGTGCCTCAGGTTCCCTCCCCTCCCACAGCATCTGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCCGCTCTTCAGAAAGGTTTCAACATTGCTCACGCAACGGTATGTTCTCGAAACGAAGGAGGCAGTTTTAG | 888 | 47.41 | MKIQCNVCEMAEATVLCCADEAALCWACDENIHAANKLASKHQRVPLSGSSSQMPRCDICQEASGYIFCLEDRALLCRKCDVAIHTANAYVTGHQRFLLTGVKVALEPTDPVPCSSIANSHSREISTKTKVRPPSDKEFSMPSSGELSRSLSVQGGSDDLMTNRTLLTGDSASGGFSQWQIDELINLTGFNQNYGFMDNGSSKADSGKLGDSDSSPSLRAADVELDDDDECSGHIPEASWTVPQVPSPPTASGLYWPRSYHNSMDGAVFVPDIRSSERFQHCSRNGMFSKRRRQF | 295 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 3501007 | 3504055 | + | Carg13094-RA | Car04g00611 | 146036 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car04g00611 | 295 | MobiDBLite | consensus disorder prediction | 115 | 157 | - | - | |
| Car04g00611 | 295 | Pfam | B-box zinc finger | 53 | 95 | IPR000315 | GO:0008270 | |
| Car04g00611 | 295 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270 | |
| Car04g00611 | 295 | MobiDBLite | consensus disorder prediction | 141 | 157 | - | - | |
| Car04g00611 | 295 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g01519 | Car-Chr1:12832885 | Car04g00611 | Car-Chr4:3501007 | 5.32E-13 | dispersed | |
| Car04g00611 | Car-Chr4:3501007 | Car08g00177 | Car-Chr8:1086956 | 4.77E-44 | dispersed | |
| Car17g00573 | Car-Chr17:5416293 | Car04g00611 | Car-Chr4:3501007 | 1.44E-11 | dispersed | |
| Car16g00390 | Car-Chr16:2396513 | Car04g00611 | Car-Chr4:3501007 | 0 | wgd | |
| Car16g00390 | Car-Chr16:2396513 | Car04g00611 | Car-Chr4:3501007 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3278 | PF00643 | zf-B_box | 4.40E-07 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car04g00611 | - | - | csv:101209756 | 546.199 |