Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00611 ATGAAGATTCAGTGCAATGTCTGCGAAATGGCTGAAGCCACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGCGATGAGAACATTCATGCCGCCAACAAGCTCGCTAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCGTCTCAGATGCCCAGATGCGACATCTGCCAGGAAGCTAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCAATACACACAGCAAATGCTTACGTAACGGGTCATCAACGCTTTCTGCTCACTGGTGTGAAAGTCGCACTCGAGCCAACCGACCCCGTTCCTTGTTCTTCCATAGCTAATTCACATTCTAGAGAGATATCAACCAAGACAAAAGTTAGACCACCGTCTGATAAGGAATTCTCGATGCCTTCGTCTGGTGAACTCAGCAGAAGCCTGTCTGTTCAAGGTGGATCTGATGACTTAATGACAAATAGAACATTGCTTACTGGAGATTCTGCTTCTGGTGGCTTTTCACAATGGCAAATAGATGAACTCATTAATCTGACTGGATTCAATCAGAATTATGGGTTTATGGATAACGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGACTCCGACTCATCACCAAGTTTGAGAGCTGCTGATGTTGAACTCGACGATGACGATGAATGCTCGGGTCACATTCCAGAGGCTTCCTGGACTGTGCCTCAGGTTCCCTCCCCTCCCACAGCATCTGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCCGCTCTTCAGAAAGGTTTCAACATTGCTCACGCAACGGTATGTTCTCGAAACGAAGGAGGCAGTTTTAG 888 47.41 MKIQCNVCEMAEATVLCCADEAALCWACDENIHAANKLASKHQRVPLSGSSSQMPRCDICQEASGYIFCLEDRALLCRKCDVAIHTANAYVTGHQRFLLTGVKVALEPTDPVPCSSIANSHSREISTKTKVRPPSDKEFSMPSSGELSRSLSVQGGSDDLMTNRTLLTGDSASGGFSQWQIDELINLTGFNQNYGFMDNGSSKADSGKLGDSDSSPSLRAADVELDDDDECSGHIPEASWTVPQVPSPPTASGLYWPRSYHNSMDGAVFVPDIRSSERFQHCSRNGMFSKRRRQF 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3501007 3504055 + Carg13094-RA Car04g00611 146036

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00611 295 MobiDBLite consensus disorder prediction 115 157 - -
Car04g00611 295 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Car04g00611 295 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Car04g00611 295 MobiDBLite consensus disorder prediction 141 157 - -
Car04g00611 295 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00611 - - - csv:101209756 546.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01519 Car-Chr1:12832885 Car04g00611 Car-Chr4:3501007 5.32E-13 dispersed
Car04g00611 Car-Chr4:3501007 Car08g00177 Car-Chr8:1086956 4.77E-44 dispersed
Car17g00573 Car-Chr17:5416293 Car04g00611 Car-Chr4:3501007 1.44E-11 dispersed
Car16g00390 Car-Chr16:2396513 Car04g00611 Car-Chr4:3501007 0 wgd
Car16g00390 Car-Chr16:2396513 Car04g00611 Car-Chr4:3501007 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g00003 CST 1 382 Orphan Transcription Factor Family AT5G61850 67.2 2.3e-121 433.0
Car10g00006 CST 1 385 Orphan Transcription Factor Family AT5G61850 66.8 3.0e-121 432.6
Car08g00177 CST 1 161 Orphan Transcription Factor Family AT1G06040 69.0 7.9e-60 227.3
Car04g00611 . 1 109 Orphan Transcription Factor Family AT1G06040 68.8 7.7e-39 157.5
Car16g00390 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.3e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3278 PF00643 zf-B_box 4.40E-07 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00611 Car_Chr04 FPKM 30.705362 31.405495 49.888794 47.164181 20.882738 21.298462 21.616095 28.576645 28.215853 28.25235