Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00615 ATGACGTCGGGGACGAGGCTACCAACATGGAGGGAGCGGGAGAACAACAAGAGAAGGGAGAGAAGGAGAAGAGCTATAGCGGCTAAGATCTTTGCTGGACTCAGGATGTATGGCAACTACAAGCTTCCCAAGCATTGCGATAACAATGAGGTGCTTAAAGCTCTCTGCAACGAGGCAGGATGGACCGTCGAACCTGATGGTACCACTTATCGTAAGGGATGCAAACCAATTGAACGTATGGATGTGGTTGGCGGATCGGCATCTGCAAGTCTGTACGCATCTCACCAACCAAGTCCTTGTGCTTCATTCAATCCAAGCCCCGGCTCATCTTCTTTTCCAAGTCCAGCATCATCCTCATATGTCGCTAATTTGAATGCTGATGGCAATTCATTAATCCCATGGCTCAAAAACCTTTCATCTTCATCATCTTCGGCATCCTCATCTAAACTTCCCAATCACTATATTCATGGAGGTTCTATCAGTGCACCTGTTACTCCTCCTCTGAGTTCCCCAACTGCTCGAACACCCCGACTGAGAGCCGACTGGGAGGACCAGTCTGTACTTCCAGGATGGAGTACACACTATAATTCCTCCCTGCCATCTTCTACTCCTCCAAGTCCTGGACGTCAGATTGTTCCCAATCCAGAATGGTTTGCTGGCCTTAGGATTCCTCAGGGTGGGCCCAATTCTCCAACATTTAGTCTTGTTTCTACTAACCCATTTGGTTTCAAGGAAGCAGCAATGAATGGTGGACGAGGATCTCGCATGTGGACCCCTGGTCAAAGTGGGACCTGCTCCCCTGCCATTGCAGCAGGCTCCGATCACACCGCAGATATTCCAATGTCAGAAGTGATCTCTGATGAGTTCGCATTTGGAAGCAATGCCGCAGGAATTGTGAAGGCATGGGAAGGAGAACGGATTCATGAAGAATGTGGTTCAGATGACCTAGAGCTGACTCTTGGGAACTCAAGGACCAGATTTAAGTTATAA 990 48.69 MTSGTRLPTWRERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPIERMDVVGGSASASLYASHQPSPCASFNPSPGSSSFPSPASSSYVANLNADGNSLIPWLKNLSSSSSSASSSKLPNHYIHGGSISAPVTPPLSSPTARTPRLRADWEDQSVLPGWSTHYNSSLPSSTPPSPGRQIVPNPEWFAGLRIPQGGPNSPTFSLVSTNPFGFKEAAMNGGRGSRMWTPGQSGTCSPAIAAGSDHTADIPMSEVISDEFAFGSNAAGIVKAWEGERIHEECGSDDLELTLGNSRTRFKL 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3523205 3526506 - Carg13090-RA Car04g00615 146040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00615 329 MobiDBLite consensus disorder prediction 158 180 - -
Car04g00615 329 MobiDBLite consensus disorder prediction 98 118 - -
Car04g00615 329 MobiDBLite consensus disorder prediction 1 20 - -
Car04g00615 329 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 139 IPR008540 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00615 - - - csv:101210002 575.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00615 Car-Chr4:3523205 Car13g00463 Car-Chr13:6967221 1.75E-134 dispersed
Car16g00394 Car-Chr16:2419196 Car04g00615 Car-Chr4:3523205 3.09E-179 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car12g00460 . 1 306 BZR Transcription Factor Family AT1G75080 59.5 2.8e-82 302.8
Car07g00444 CST 33 323 BZR Transcription Factor Family AT1G75080 58.6 8.4e-79 291.2
Car03g00704 CST 28 318 BZR Transcription Factor Family AT1G75080 58.4 1.9e-78 290.0
Car05g00188 CCT 185 446 BZR Transcription Factor Family AT1G75080 60.7 1.3e-76 283.9
Car12g00460 . 1 306 BZR Transcription Factor Family AT1G19350 57.6 4.5e-80 295.4
Car07g00444 CST 33 321 BZR Transcription Factor Family AT1G19350 59.6 3.2e-78 289.3
Car03g00704 CST 28 317 BZR Transcription Factor Family AT1G19350 59.2 5.4e-78 288.5
Car05g00188 CCT 185 446 BZR Transcription Factor Family AT1G19350 60.7 1.3e-76 283.9
Car07g00444 CST 10 323 BZR Transcription Factor Family AT3G50750 56.6 1.4e-76 283.5
Car03g00704 CST 6 313 BZR Transcription Factor Family AT3G50750 57.7 1.9e-76 283.1
Car05g00188 CCT 153 445 BZR Transcription Factor Family AT3G50750 50.2 2.0e-57 219.9
Car04g00615 . 77 326 BZR Transcription Factor Family AT4G18890 54.2 1.9e-49 193.0
Car18g00409 CST 80 326 BZR Transcription Factor Family AT4G18890 51.2 1.3e-48 190.3
Car16g00394 . 77 325 BZR Transcription Factor Family AT4G18890 52.6 4.8e-48 188.3
Car04g00615 . 1 326 BZR Transcription Factor Family AT1G78700 72.2 1.2e-117 420.2
Car16g00394 . 1 325 BZR Transcription Factor Family AT1G78700 71.9 3.2e-115 412.1
Car18g00409 CST 1 326 BZR Transcription Factor Family AT1G78700 69.2 2.8e-103 372.5
Car13g00463 CST 1 342 BZR Transcription Factor Family AT1G78700 65.5 3.6e-103 372.1
Car03g00704 CST 28 200 BZR Transcription Factor Family AT4G36780 78.5 1.0e-63 240.7
Car07g00444 CST 33 204 BZR Transcription Factor Family AT4G36780 76.3 6.2e-61 231.5
Car05g00188 CCT 185 349 BZR Transcription Factor Family AT4G36780 57.6 2.6e-38 156.4
Car12g00460 . 33 204 BZR Transcription Factor Family AT4G36780 56.7 1.7e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3279 PF05687 BES1_N 3.80E-65 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00615 Car_Chr04 FPKM 1.050085 1.161821 0.85116 0.903417 0.744312 0.794243 0.87708 0.880826 0.795419 0.635277