Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00622 ATGGCTAATCGGGGTGGGGGGTCGTTTTCACCCTCAAATGTTTCATCTCAAGGAAGAGATGGCCTTTACGTTGAGTTATGGAAGGCCTCTGCTGGGCCTCTTGTCGAAGTTCCTCGTGTTCATGAACATGTTTTCTATTTTCCTCAAGGCCACATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTAAATCAGAAACTCCCTTCCTTTAATCTTCCCTCCAAAATTCTCTGTCATGTAGTTGATGTCCGGCTGCTGAAAATGTGGGTTAGAAAACAAGAACCCTCTTGGATTTTCTCGGGAACCAAACAGGCAGAGCAGGAGACGGATGAGGTTTATGCACAGATATCTTTAATTCCAGAAGGAAATCAAGAGGAACCTACAACTCCTGGTCCTTCACCCGGGGAATGTCGAAAATCGGAAGTTCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGGGGATTCTCCGTGCTCCGTAAACACGCTACCGAATGCCTGCCTCCATTGGATATGACCCAACAGACCCCGACTCAAGAACTCATAGCCAAAGATCTTCACGGTTACGAGTGGCGATTCAAGCATATATTCAGGGGTCAACCACGAAGGCATTTGCTAACGACCGGATGGAGCACCTTTGTTACGTCTAAGAGATTAGTTGCTGGAGATTCGTTTGTATTCTTGAGGGGGGAAAATGGGGAATTACGAGTCGGAGTGAGGCGTCTTTCTCGTCAACAAACCACCATGCCTTCGTCTGTGATTTCGAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCTGCTGCAACTCTAACTCGCTTCGTTGTCTATTATAAGCCGAGGGCAAGCCAGTTTCTGGTCAGCTTAAGTAAGTATAAAGAAGCCATGAACACTAAGTTCTTAGTTGGGATGAGGTTCAAGATGAGGTTTGAAGGAGAGGACTCTCCTGAGAGAAGGTTTTCGGGCACCATAATCGGCGTTGACAACATATCTCCTTACTGGCCCAATTCGCAATGGCGATCACTGAGAGTTCAATGGGATGAACTTGCATCTATTCAAAGACCCGAGAGGGTTTCGCCATGGGAGATCGAACTGTTTGTGGCTCCCGCGTCCCAGAGCATTCCTCAATCAATTTCGGTGAAGAACAAAAGGCCTCGGCCTCCACTTGACATTCCTGATTCTGATAATTCAACCGTGACAACTCTTCGACATCCAGTATCGACTCAATCACATGATGATAAAACACAGCTGAGTGTTCCTGCAGGATGGCATTACAAGCAAACAGATATTAGCAGCAATGGGAATTCGGTATCGAGGACTCATAACGAGGGTTCTTGGTTAACCGTCCCGAATGGGAGTGTTTTGCAGCATCGATTAAAGGATTCGACAGAGGACCATAAAAGCAATTCTGTTTGGTCAGCAGTCTTCCCTGGAGTGCCAACAGCACACTCGACATGTCCAACTCCACGCACATCGAACCCAATGAGTGACCAAATAAATGAGTTTGGGGAAGAGGGGAGGAAAACCGAGGTGGCTCCTAGCTGTCGCTTGTTTGGGATCGAGCTCATTGATCATTCTAAGAGGCCCGTTCCACCCGAAAGGACTGCTGATCAATCGAACAGCGCAGCAAATGAAGTCGCTGAAAGCCATGTCAATACCTTGCTGTCATCTAATGCAGAGCAGCAGGGCTCAAACCTGCCAAAGGCTTCTTCTAAAGAACGAAAATTAGGACTTGTACAAGCACTTCCTAAAGAGATCCAGCACAAGCACAATGCCTCGTCCAACTGTCGAAGCCGAACCAAGGGGATGGCTGTGGGACGAGCGGTGGACCTTACGACATTGGTAGGGTATGACCAACTCATTGACGAAATGGAAAAGATGTTTGATATCAAGGGAGAACTTCGTCCTCGTGACAAGTGGGAGATTGTATTCACAGACGATGAAGGCGATACGATGCTCATGGGCGATTATCCATGGCAGGAATTCTGTAACATGGTGAGAAGAATATACATATGGTCGAGTCAAGATGTAAAGACGAGTTCGGGCAGAAGACTCACAATGTCTGCGATCGAATTCGATGGAACTGCAATAACCTCGGAATCAGCTGATAGCTGA 2136 47.19 MANRGGGSFSPSNVSSQGRDGLYVELWKASAGPLVEVPRVHEHVFYFPQGHMEQLEASTNQELNQKLPSFNLPSKILCHVVDVRLLKMWVRKQEPSWIFSGTKQAEQETDEVYAQISLIPEGNQEEPTTPGPSPGECRKSEVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELIAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLSRQQTTMPSSVISSHSMHLGVLATASHAAATLTRFVVYYKPRASQFLVSLSKYKEAMNTKFLVGMRFKMRFEGEDSPERRFSGTIIGVDNISPYWPNSQWRSLRVQWDELASIQRPERVSPWEIELFVAPASQSIPQSISVKNKRPRPPLDIPDSDNSTVTTLRHPVSTQSHDDKTQLSVPAGWHYKQTDISSNGNSVSRTHNEGSWLTVPNGSVLQHRLKDSTEDHKSNSVWSAVFPGVPTAHSTCPTPRTSNPMSDQINEFGEEGRKTEVAPSCRLFGIELIDHSKRPVPPERTADQSNSAANEVAESHVNTLLSSNAEQQGSNLPKASSKERKLGLVQALPKEIQHKHNASSNCRSRTKGMAVGRAVDLTTLVGYDQLIDEMEKMFDIKGELRPRDKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKTSSGRRLTMSAIEFDGTAITSESADS 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3574810 3578496 - Carg13083-RA Car04g00622 146047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00622 711 Pfam Auxin response factor 271 349 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car04g00622 711 ProSiteProfiles B3 DNA-binding domain profile. 145 247 IPR003340 GO:0003677
Car04g00622 711 MobiDBLite consensus disorder prediction 400 422 - -
Car04g00622 711 MobiDBLite consensus disorder prediction 534 555 - -
Car04g00622 711 MobiDBLite consensus disorder prediction 384 422 - -
Car04g00622 711 Pfam B3 DNA binding domain 145 245 IPR003340 GO:0003677
Car04g00622 711 MobiDBLite consensus disorder prediction 540 555 - -
Car04g00622 711 ProSiteProfiles PB1 domain profile. 600 681 IPR000270 GO:0005515
Car04g00622 711 Pfam AUX/IAA family 647 684 IPR033389 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00622 Car-Chr4:3574810 Car08g00100 Car-Chr8:581618 0 dispersed
Car16g00472 Car-Chr16:3011343 Car04g00622 Car-Chr4:3574810 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3280 PF02362 B3 8.90E-22 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00622 K14486 - csv:101213942 1061.6