Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00642 ATGCCGGAGCTGGCGATGGGTTCGTCGGTGTACCTCCGACAGAGAGATCTGGTCCATAAATTTTGCGTTGAGAATCACCACCTGCAACTCCAACGACAGCACCGCTATCAACCAGTTGAAATTTCTGCTGGTTATGGGGGTTTTCCGGCGTCGGAGAAGAAGAAGCTGTACAGGGGTGTGAGACAGAGGCATTGGGGGAAATGGGTGGCGGAGATTAGGCTGCCCCAGAACAGAATGAGGGTTTGGTTGGGAACCTACGACACGGCGGAGGCTGCCGCCTATGCGTATGACAGGGCGGCGTATAAGCTCAGAGGAGAATACGCGAGGCTGAATTTTCCCAATTTGAAGGAGTTTAGGAATTTGGGGTTCGCCGATTGCGGCCGTTTGAATGCTTTAAAGAACTCTGTTGATGCTAAAATTCAAGCAATTTGTTCGAAGATAAAGAGGGAAAGGGCTAAAAAGAGAAGCAAGAAATTGGATCCCAAAAACATCCCCGTTTCTGAGTCATCTTCGCCGTCGGTGATGGCAGCGACATGGTGTTCGAGCGGTGAAACGGGGTGTTCGTCGGCGGTTTCTGAAGATGGGTTTTGGAGAACGGACAATTCGCCGCCACCGTCGTCGTCGTCCGGCTCGGCGGAGTCGGCGGTGGAGGTGGCGATGGTGGTGGAAGGGGACTGTGAAGGGTACTCTTCGCTGGCGAAGATGCCGTCTTTTGATCCAGATTTAATTTGGGAAGTTCTTGCAAATTAA 750 52.13 MPELAMGSSVYLRQRDLVHKFCVENHHLQLQRQHRYQPVEISAGYGGFPASEKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKEFRNLGFADCGRLNALKNSVDAKIQAICSKIKRERAKKRSKKLDPKNIPVSESSSPSVMAATWCSSGETGCSSAVSEDGFWRTDNSPPPSSSSGSAESAVEVAMVVEGDCEGYSSLAKMPSFDPDLIWEVLAN 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3676994 3677743 + Carg13063-RA Car04g00642 146067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00642 249 MobiDBLite consensus disorder prediction 193 214 - -
Car04g00642 249 Pfam AP2 domain 57 106 IPR001471 GO:0003700|GO:0006355
Car04g00642 249 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00642 Car-Chr4:3676994 Car09g00582 Car-Chr9:3296296 1.01E-41 dispersed
Car15g01151 Car-Chr15:9048177 Car04g00642 Car-Chr4:3676994 2.04E-48 wgd
Car16g00491 Car-Chr16:3147111 Car04g00642 Car-Chr4:3676994 8.09E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3281 PF00847 AP2 4.40E-14 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00642 - - cmos:111447275 439.499