Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00683 ATGCAGCACTACAGCAAGAGAATGGAACACTATAAGCTACACCTTACATTATTTGTAGAAGAAAGAGCACATGTTTCGAGAGAAGTTGTGTTGGACTCCAACGCGATTGTGGGAAAATCTAAAACCCGTTGTTGGATCTATGCCCACGCAAAGCAACACGCTGAAAAGTACTTCCCGCTTGATTCTTCATCCAACGACAAGGGTCTTCTCTTGAACTTCGAAGACCGCTGTGGAAAATCGTGGCGGTTCCGTTACTCTTACTGGACCAGCAGCCAGAGCTACGTCATGACTAAAGGCTGGAGCCGCTTTGTTAAAGAGAAGCGCCTCGATGCTGGTGATATCGTCTCCTTTCAACGAGGCCTTGGTCATCTTGGTAAAGATCGGTTTTTTATTGATTGGCGCCGCCGCCCACCTCATGCCCCGCTTGACACACCTATTACTTTTCACCACAACCACCACCTCCACGGCGGTGGAGCCGCCGGGGTTGCCCAAATTCCTCACCATTTTCACCTTCACCAGTGGACTCCAGTTGCCACACCCTTATCTTTACCCAGGGACCACCTCCTCCACTTGCCGCAGAATAATAGTAATCATAATAATCTTACCCTATTTCATAATCATAATTTTAATCTCTATAATCATCATTATCTTAACCCTCCTCCCATCCGAGACGGCGGTGGTTCGCCATCGCTTTTGTACCATTTAAGATCTGCACCGCCACCGCCGCCCGTGGCGGTGGGCGGTGGTGGCGGTGGAATTGGGAAAGGTGCTGCTTCTTCTAAGACATTGAGACTTTTTGGTGTCAACATGGAATGTGCAGTGTCTGAAGATCAATCCGATGATGAATGTGACATAACAACCTCGACTACGACAATGTCGCCTCAATTCCGCGTTTACGATGGAATGCCGATGTCGATACCGATACCTATGCCGAACAGTAACAACAAGCTGACGACCGACTTTTTCAATAAAGGGAAGTCCGATGGCTGTCTCTACTTGGTTGGACAAATGGCAAAGCCCATGCAGGTTTTAGCAGAGAAAAGTTTGAAAGAGATGGCTTTTAACAGTTTTGGATATGGCAGTGGAAGCAAATGCTTTCTTTTTCTGGTGATTAAATGCTTCATTTCTGTTGACAATCACAGTCTCACAAACAAGTTTGGTTTTGTTTATAGGTTTTGA 1179 46.56 MQHYSKRMEHYKLHLTLFVEERAHVSREVVLDSNAIVGKSKTRCWIYAHAKQHAEKYFPLDSSSNDKGLLLNFEDRCGKSWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGLGHLGKDRFFIDWRRRPPHAPLDTPITFHHNHHLHGGGAAGVAQIPHHFHLHQWTPVATPLSLPRDHLLHLPQNNSNHNNLTLFHNHNFNLYNHHYLNPPPIRDGGGSPSLLYHLRSAPPPPPVAVGGGGGGIGKGAASSKTLRLFGVNMECAVSEDQSDDECDITTSTTTMSPQFRVYDGMPMSIPIPMPNSNNKLTTDFFNKGKSDGCLYLVGQMAKPMQVLAEKSLKEMAFNSFGYGSGSKCFLFLVIKCFISVDNHSLTNKFGFVYRF 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3966772 3969739 - Carg14136-RA Car04g00683 146108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00683 392 ProSiteProfiles B3 DNA-binding domain profile. 71 137 IPR003340 GO:0003677
Car04g00683 392 Pfam B3 DNA binding domain 51 136 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00683 - - - cmax:111480823 469.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00683 Car-Chr4:3966772 Car15g01205 Car-Chr15:9362991 1.89E-48 dispersed
Car16g00537 Car-Chr16:3397351 Car04g00683 Car-Chr4:3966772 1.90E-99 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car14g00304 . 1 157 RAV Transcription Factor Family AT2G36080 62.3 1.4e-48 189.9
Car17g00502 . 73 209 RAV Transcription Factor Family AT2G36080 62.1 5.9e-44 174.5
Car06g00437 . 1 162 RAV Transcription Factor Family AT2G36080 54.5 2.5e-42 169.1
Car02g00707 . 48 157 RAV Transcription Factor Family AT2G36080 69.9 1.5e-39 159.8
Car16g00537 . 28 134 RAV Transcription Factor Family AT2G36080 70.3 5.7e-39 157.9
Car18g00968 . 166 301 RAV Transcription Factor Family AT2G36080 57.4 8.3e-38 154.1
Car15g01205 . 27 135 RAV Transcription Factor Family AT2G36080 68.8 3.2e-37 152.1
Car02g00707 . 48 166 RAV Transcription Factor Family AT2G46870 86.7 1.1e-56 217.6
Car17g00502 . 73 188 RAV Transcription Factor Family AT2G46870 82.1 1.5e-53 207.2
Car15g01205 . 27 146 RAV Transcription Factor Family AT2G46870 81.0 1.8e-51 200.3
Car16g00537 . 28 144 RAV Transcription Factor Family AT2G46870 76.2 1.1e-48 191.0
Car04g00683 . 19 137 RAV Transcription Factor Family AT2G46870 68.3 7.9e-39 158.3
Car04g01569 . 179 291 RAV Transcription Factor Family AT2G46870 67.2 7.9e-39 158.3
Car18g00968 . 172 284 RAV Transcription Factor Family AT2G46870 65.5 3.9e-38 156.0
Car04g01958 . 164 275 RAV Transcription Factor Family AT2G46870 66.1 1.9e-37 153.7
Car14g00304 . 37 153 RAV Transcription Factor Family AT2G46870 64.2 1.9e-37 153.7
Car14g00304 . 37 164 RAV Transcription Factor Family AT3G11580 63.4 1.9e-42 169.9
Car17g00502 . 69 187 RAV Transcription Factor Family AT3G11580 62.3 6.9e-40 161.4
Car06g00437 . 1 131 RAV Transcription Factor Family AT3G11580 58.3 9.0e-40 161.0
Car02g00707 . 48 159 RAV Transcription Factor Family AT3G11580 63.4 4.5e-39 158.7
Car16g00537 . 10 134 RAV Transcription Factor Family AT3G11580 59.1 7.6e-39 157.9
Car02g00707 . 23 171 RAV Transcription Factor Family AT3G61970 69.7 1.4e-53 207.2
Car15g01205 . 7 155 RAV Transcription Factor Family AT3G61970 66.4 3.6e-49 192.6
Car16g00537 . 17 135 RAV Transcription Factor Family AT3G61970 76.4 1.1e-48 191.0
Car17g00502 . 74 188 RAV Transcription Factor Family AT3G61970 79.8 1.8e-48 190.3
Car14g00304 . 37 153 RAV Transcription Factor Family AT3G61970 65.0 3.4e-39 159.5
Car04g01569 . 179 291 RAV Transcription Factor Family AT3G61970 67.5 4.4e-39 159.1
Car18g00968 . 172 284 RAV Transcription Factor Family AT3G61970 65.5 1.1e-37 154.5
Car04g01958 . 163 275 RAV Transcription Factor Family AT3G61970 66.1 1.9e-37 153.7
Car02g00707 . 49 165 RAV Transcription Factor Family AT4G01500 66.9 4.8e-42 169.1
Car17g00502 . 76 184 RAV Transcription Factor Family AT4G01500 72.4 1.1e-41 167.9
Car15g01205 . 8 146 RAV Transcription Factor Family AT4G01500 59.1 7.6e-40 161.8
Car16g00537 . 15 134 RAV Transcription Factor Family AT4G01500 61.9 3.8e-39 159.5
Car14g00304 . 32 231 RAV Transcription Factor Family AT5G06250 55.1 7.5e-54 208.0
Car17g00502 . 76 184 RAV Transcription Factor Family AT5G06250 66.4 4.7e-40 162.2
Car02g00707 . 49 157 RAV Transcription Factor Family AT5G06250 66.4 1.4e-39 160.6
Car06g00437 . 27 131 RAV Transcription Factor Family AT5G06250 69.2 1.4e-39 160.6
Car16g00537 . 29 134 RAV Transcription Factor Family AT5G06250 68.4 1.8e-39 160.2
Car18g00968 . 169 297 RAV Transcription Factor Family AT5G06250 60.3 4.0e-39 159.1
Car04g01569 . 174 287 RAV Transcription Factor Family AT5G06250 62.3 1.5e-38 157.1
Car15g01205 . 28 135 RAV Transcription Factor Family AT5G06250 64.4 4.9e-37 152.1
Car10g00440 . 41 334 RAV Transcription Factor Family AT1G50680 52.1 2.8e-82 302.8
Car11g00706 . 52 279 RAV Transcription Factor Family AT1G50680 59.9 1.3e-76 283.9
Car10g00440 . 37 334 RAV Transcription Factor Family AT1G51120 50.2 4.7e-80 295.4
Car11g00706 . 52 284 RAV Transcription Factor Family AT1G51120 59.6 5.2e-79 292.0
Car04g01569 . 30 343 RAV Transcription Factor Family AT1G13260 65.4 4.5e-104 375.2
Car18g00968 . 17 342 RAV Transcription Factor Family AT1G13260 61.7 5.2e-100 361.7
Car03g01373 . 36 323 RAV Transcription Factor Family AT1G13260 64.0 7.8e-96 347.8
Car04g01958 . 40 324 RAV Transcription Factor Family AT1G13260 62.8 2.0e-88 323.2
Car02g00707 . 50 163 RAV Transcription Factor Family AT1G13260 68.7 9.6e-38 154.8
Car17g00502 . 72 184 RAV Transcription Factor Family AT1G13260 68.4 1.6e-37 154.1
Car14g00304 . 24 154 RAV Transcription Factor Family AT1G13260 59.5 2.4e-36 150.2
Car04g01569 . 20 310 RAV Transcription Factor Family AT3G25730 65.1 5.8e-96 348.2
Car18g00968 . 17 309 RAV Transcription Factor Family AT3G25730 63.8 4.6e-93 338.6
Car03g01373 . 36 289 RAV Transcription Factor Family AT3G25730 66.3 2.0e-88 323.2
Car04g01958 . 1 321 RAV Transcription Factor Family AT3G25730 56.3 8.3e-87 317.8
Car04g01569 . 1 344 RAV Transcription Factor Family AT1G68840 60.9 2.2e-109 392.9
Car18g00968 . 10 343 RAV Transcription Factor Family AT1G68840 61.1 2.5e-105 379.4
Car03g01373 . 1 324 RAV Transcription Factor Family AT1G68840 56.9 4.8e-93 338.6
Car04g01958 . 25 325 RAV Transcription Factor Family AT1G68840 59.1 5.9e-91 331.6
Car17g00502 . 76 184 RAV Transcription Factor Family AT1G68840 70.3 2.0e-38 157.1
Car02g00707 . 49 157 RAV Transcription Factor Family AT1G68840 70.3 5.8e-38 155.6
Car14g00304 . 37 167 RAV Transcription Factor Family AT1G68840 60.2 1.1e-36 151.4
Car16g00537 . 20 134 RAV Transcription Factor Family AT1G68840 64.4 1.4e-36 151.0
Car04g01569 . 20 310 RAV Transcription Factor Family AT3G25730 65.1 5.8e-96 348.2
Car18g00968 . 17 309 RAV Transcription Factor Family AT3G25730 63.8 4.6e-93 338.6
Car03g01373 . 36 289 RAV Transcription Factor Family AT3G25730 66.3 2.0e-88 323.2
Car04g01958 . 1 321 RAV Transcription Factor Family AT3G25730 56.3 8.3e-87 317.8
Car10g00440 . 37 334 RAV Transcription Factor Family AT1G51120 50.2 4.7e-80 295.4
Car11g00706 . 52 284 RAV Transcription Factor Family AT1G51120 59.6 5.2e-79 292.0
Car14g00304 . 37 164 RAV Transcription Factor Family AT3G11580 63.4 1.9e-42 169.9
Car17g00502 . 69 187 RAV Transcription Factor Family AT3G11580 62.3 6.9e-40 161.4
Car06g00437 . 1 131 RAV Transcription Factor Family AT3G11580 58.3 9.0e-40 161.0
Car02g00707 . 48 159 RAV Transcription Factor Family AT3G11580 63.4 4.5e-39 158.7
Car16g00537 . 10 134 RAV Transcription Factor Family AT3G11580 59.1 7.6e-39 157.9
Car02g00707 . 49 165 RAV Transcription Factor Family AT4G01500 66.9 4.8e-42 169.1
Car17g00502 . 76 184 RAV Transcription Factor Family AT4G01500 72.4 1.1e-41 167.9
Car15g01205 . 8 146 RAV Transcription Factor Family AT4G01500 59.1 7.6e-40 161.8
Car16g00537 . 15 134 RAV Transcription Factor Family AT4G01500 61.9 3.8e-39 159.5
Car14g00304 . 1 157 RAV Transcription Factor Family AT2G36080 62.3 1.4e-48 189.9
Car17g00502 . 73 209 RAV Transcription Factor Family AT2G36080 62.1 5.9e-44 174.5
Car06g00437 . 1 162 RAV Transcription Factor Family AT2G36080 54.5 2.5e-42 169.1
Car02g00707 . 48 157 RAV Transcription Factor Family AT2G36080 69.9 1.5e-39 159.8
Car16g00537 . 28 134 RAV Transcription Factor Family AT2G36080 70.3 5.7e-39 157.9
Car18g00968 . 166 301 RAV Transcription Factor Family AT2G36080 57.4 8.3e-38 154.1
Car15g01205 . 27 135 RAV Transcription Factor Family AT2G36080 68.8 3.2e-37 152.1
Car14g00304 . 32 231 RAV Transcription Factor Family AT5G06250 55.1 7.5e-54 208.0
Car17g00502 . 76 184 RAV Transcription Factor Family AT5G06250 66.4 4.7e-40 162.2
Car02g00707 . 49 157 RAV Transcription Factor Family AT5G06250 66.4 1.4e-39 160.6
Car06g00437 . 27 131 RAV Transcription Factor Family AT5G06250 69.2 1.4e-39 160.6
Car16g00537 . 29 134 RAV Transcription Factor Family AT5G06250 68.4 1.8e-39 160.2
Car18g00968 . 169 297 RAV Transcription Factor Family AT5G06250 60.3 4.0e-39 159.1
Car04g01569 . 174 287 RAV Transcription Factor Family AT5G06250 62.3 1.5e-38 157.1
Car15g01205 . 28 135 RAV Transcription Factor Family AT5G06250 64.4 4.9e-37 152.1
Car02g00707 . 48 166 RAV Transcription Factor Family AT2G46870 86.7 1.1e-56 217.6
Car17g00502 . 73 188 RAV Transcription Factor Family AT2G46870 82.1 1.5e-53 207.2
Car15g01205 . 27 146 RAV Transcription Factor Family AT2G46870 81.0 1.8e-51 200.3
Car16g00537 . 28 144 RAV Transcription Factor Family AT2G46870 76.2 1.1e-48 191.0
Car04g00683 . 19 137 RAV Transcription Factor Family AT2G46870 68.3 7.9e-39 158.3
Car04g01569 . 179 291 RAV Transcription Factor Family AT2G46870 67.2 7.9e-39 158.3
Car18g00968 . 172 284 RAV Transcription Factor Family AT2G46870 65.5 3.9e-38 156.0
Car04g01958 . 164 275 RAV Transcription Factor Family AT2G46870 66.1 1.9e-37 153.7
Car14g00304 . 37 153 RAV Transcription Factor Family AT2G46870 64.2 1.9e-37 153.7
Car10g00440 . 41 334 RAV Transcription Factor Family AT1G50680 52.1 2.8e-82 302.8
Car11g00706 . 52 279 RAV Transcription Factor Family AT1G50680 59.9 1.3e-76 283.9
Car02g00707 . 23 171 RAV Transcription Factor Family AT3G61970 69.7 1.4e-53 207.2
Car15g01205 . 7 155 RAV Transcription Factor Family AT3G61970 66.4 3.6e-49 192.6
Car16g00537 . 17 135 RAV Transcription Factor Family AT3G61970 76.4 1.1e-48 191.0
Car17g00502 . 74 188 RAV Transcription Factor Family AT3G61970 79.8 1.8e-48 190.3
Car14g00304 . 37 153 RAV Transcription Factor Family AT3G61970 65.0 3.4e-39 159.5
Car04g01569 . 179 291 RAV Transcription Factor Family AT3G61970 67.5 4.4e-39 159.1
Car18g00968 . 172 284 RAV Transcription Factor Family AT3G61970 65.5 1.1e-37 154.5
Car04g01958 . 163 275 RAV Transcription Factor Family AT3G61970 66.1 1.9e-37 153.7
Car04g01569 . 30 343 RAV Transcription Factor Family AT1G13260 65.4 4.5e-104 375.2
Car18g00968 . 17 342 RAV Transcription Factor Family AT1G13260 61.7 5.2e-100 361.7
Car03g01373 . 36 323 RAV Transcription Factor Family AT1G13260 64.0 7.8e-96 347.8
Car04g01958 . 40 324 RAV Transcription Factor Family AT1G13260 62.8 2.0e-88 323.2
Car02g00707 . 50 163 RAV Transcription Factor Family AT1G13260 68.7 9.6e-38 154.8
Car17g00502 . 72 184 RAV Transcription Factor Family AT1G13260 68.4 1.6e-37 154.1
Car14g00304 . 24 154 RAV Transcription Factor Family AT1G13260 59.5 2.4e-36 150.2
Car04g01569 . 1 344 RAV Transcription Factor Family AT1G68840 60.9 2.2e-109 392.9
Car18g00968 . 10 343 RAV Transcription Factor Family AT1G68840 61.1 2.5e-105 379.4
Car03g01373 . 1 324 RAV Transcription Factor Family AT1G68840 56.9 4.8e-93 338.6
Car04g01958 . 25 325 RAV Transcription Factor Family AT1G68840 59.1 5.9e-91 331.6
Car17g00502 . 76 184 RAV Transcription Factor Family AT1G68840 70.3 2.0e-38 157.1
Car02g00707 . 49 157 RAV Transcription Factor Family AT1G68840 70.3 5.8e-38 155.6
Car14g00304 . 37 167 RAV Transcription Factor Family AT1G68840 60.2 1.1e-36 151.4
Car16g00537 . 20 134 RAV Transcription Factor Family AT1G68840 64.4 1.4e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000626 3 5 4 4 3 3 5 3 3 3 3 3 6 3 3 6 3 1 4 3 3 2 3 3 3 3 2 7 4 2 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3287 PF02362 B3 3.40E-19 CL0405 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00683 Car_Chr04 FPKM 63.61586 70.358688 59.753342 58.375191 49.365059 48.810711 55.981045 94.018982 96.584824 105.500061