Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00698 ATGTCGCTTAAAAGTTTTGTTAGAGAGCTGCGAGAGATGAAAGATGGAATTGGGAGCATTTCTAAACGAGGAGAAGAAGGGAGCAGGCACTGGCGAAACCGAACAATGTCGCATATTGCACCTGATCAAGTACCTTCTTCATCGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTGCCCCCAGAATTACTTTTAGACATCATCCGGAGAGTGGAACAGAGTGAAACTTCATGGCCTGCTCGATCTGTAGTTGTTTCTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACAAAGGAGATTATCAGAACTCCCGAGCAGTGTGGAAGACTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTTCTTTATCAAAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTCGGCATGGTTCCCTCGGAGGTCAAAAAGGACAAATTGTTGTTAGCAGCCAAAAGGGTCAGAAGAGCAGCCGGGACTGACTTTATCATATCTTTGGCAGCTGATGATTTTTCTCGAGCGAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGCACAAAGTTCTCAATTTACGATAGCCAACCTCCTTGTGACCCTGCAGCTCAGCAAAATAGTCGATCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGAGTACCTGCATTTAATTACTGTGTAGGTACAATTTCTTATGAACTTAACGTTCTTCGCACTAGAGGTCCTCGGAGGATGCAGTGCATCATGCAAACCATTCCAGTCTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCAACATCATTCACATACTCTATCGATGACCACCTTTCTACCATGTCGGATTCTATGAGAAAGGGTTCAGCCAAGGACTTTAGCCCAAAGACCCTATCAGAACCAGCAGTTCAAGATTTGGATGAATCCTTGGTGCTTAAAAACAAGGCGCCGAGATGGCACGAGCAACTGCAGTGCTGGTGTCTAAATTTCAGGGGACGTGTGACCGTGGCATCTGTTAAGAACTTCCAACTCGTCGCAGCCGTCGATCAATCGCACAATGTTTCAGTGGAAGAGCAAGAGAAGGTAATTCTCCAGTTCGGAAAAATTGGAAAAGATAGCTTCACCATGGATTACCACTATCCGCTCTCTGCATTCCAAGCTTTTGCTATCTGCTTGAGCAGCTTCGACACCAAGCCAGCCTGCGAATGA 1242 46.14 MSLKSFVRELREMKDGIGSISKRGEEGSRHWRNRTMSHIAPDQVPSSSELIQQGRWANLPPELLLDIIRRVEQSETSWPARSVVVSCASVCRSWRAITKEIIRTPEQCGRLTFPISLKQPGPRESPFQFFIKRDRATSTYLLYFGMVPSEVKKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAAQQNSRSSRRFRSKQVSPRVPAFNYCVGTISYELNVLRTRGPRRMQCIMQTIPVSSIQEGGTAPTPTSFTYSIDDHLSTMSDSMRKGSAKDFSPKTLSEPAVQDLDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDSFTMDYHYPLSAFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4053007 4056443 + Carg14151-RA Car04g00698 146123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00698 413 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Car04g00698 413 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Car04g00698 413 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Car04g00698 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Car04g00698 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Car04g00698 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Car04g00698 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Car04g00698 413 PANTHER TUBBY-RELATED 1 413 - -
Car04g00698 413 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 413 - -
Car04g00698 413 MobiDBLite consensus disorder prediction 208 223 - -
Car04g00698 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Car04g00698 413 Gene3D Tubby Protein; Chain A 114 413 IPR025659 -
Car04g00698 413 Gene3D - 50 104 - -
Car04g00698 413 Pfam F-box domain 56 102 IPR001810 GO:0005515
Car04g00698 413 Pfam Tub family 117 408 IPR000007 -
Car04g00698 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Car04g00698 413 SUPERFAMILY F-box domain 49 100 IPR036047 GO:0005515
Car04g00698 413 SUPERFAMILY Tubby C-terminal domain-like 105 413 IPR025659 -
Car04g00698 413 MobiDBLite consensus disorder prediction 207 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00698 Car-Chr4:4053007 Car09g00133 Car-Chr9:637201 0 dispersed
Car16g00653 Car-Chr16:4150748 Car04g00698 Car-Chr4:4053007 0 wgd
Car04g00698 Car-Chr4:4053007 Car07g00424 Car-Chr7:2158858 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3289 PF01167 Tub 1.20E-103 CL0395 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00698 K19600 - csv:101205595 747.273