Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00733 ATGAACGGCCACAAACGAAGCACCACCCCCGCCACCGCCACCAACAGCAGTCCCGTCGGCAGCCCCACCTCTGGCAACATCTCCGACAGCTCCACGAAAGAACAAGACCGTTTCCTTCCGATCGCAAACGTGAGCCGAATAATGAAAAAATCCCTTCCGCCGAACGCGAAAATCTCGAAAGAGGCGAAAGAGACCGTGCAAGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGTGAGGCCTCGGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTCTGGGATTCGAAAATTATGTCACCACTTTGAAGACTTACCTCAACAAATATAGAGAAACAGAGGAGGAGAAGCATTCTTTGGCCAGACAGGACGATCACTCCCCGTCTCCTGCAAAATCCACGGCGGCGGTCTGTCCAGCCGAACCGATTATTGGTGGGAAATCGGCCAATTCCGTGTTGGATTTTCAGCATTTAAATTCTGGGTTTTATTCACTCGGGGCTCATAATCATAATCACAACCATCATCAAGGAAATCCAAAGAGTTACCATATAATCGACGGCGTTGGATTTGGGGAAAATTTAAGGGGTTTCAATTTGAGTGCAGTCCATGAAAATGAAGGAAATCGAGGTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA 705 49.79 MNGHKRSTTPATATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLARQDDHSPSPAKSTAAVCPAEPIIGGKSANSVLDFQHLNSGFYSLGAHNHNHNHHQGNPKSYHIIDGVGFGENLRGFNLSAVHENEGNRGRAMAAHLQQSSGW 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4256422 4257126 - Carg14187-RA Car04g00733 146158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00733 234 ProSitePatterns NF-YB/HAP3 subunit signature. 69 85 IPR003956 GO:0005634|GO:0006355|GO:0043565
Car04g00733 234 MobiDBLite consensus disorder prediction 1 38 - -
Car04g00733 234 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 38 102 IPR003958 -
Car04g00733 234 Coils Coil 114 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00733 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101214273 350.517
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00733 Car-Chr4:4256422 Car04g01334 Car-Chr4:7730799 2.89E-20 dispersed
Car04g00733 Car-Chr4:4256422 Car06g00298 Car-Chr6:1664127 6.13E-56 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car04g00733 . 30 136 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.3 3.8e-45 178.3
Car06g00298 . 22 115 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.2 1.6e-43 172.9
Car06g00298 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 3.5e-48 188.3
Car04g00733 . 14 123 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.7 1.4e-41 166.4
Car04g00733 . 33 128 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 3.8e-37 151.8
Car06g00298 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 84.0 8.0e-49 190.7
Car04g00733 . 32 125 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.7 1.3e-38 156.8
Car04g00733 . 20 134 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.1 8.1e-43 171.0
Car06g00298 . 7 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.4 1.2e-41 167.2
Car04g00733 . 28 133 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.3 5.5e-43 171.4
Car06g00298 . 11 115 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.2 1.0e-41 167.2
Car06g00298 . 12 115 CCAAT-HAP3 Transcription Factor Family AT3G53340 88.7 5.3e-48 188.0
Car04g00733 . 21 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.3 2.6e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010325 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 0 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3299 PF00808 CBFD_NFYB_HMF 6.10E-27 CL0012 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00733 Car_Chr04 FPKM 8.445428 14.392538 11.533353 9.231534 15.076519 12.063915 13.660034 1.687599 3.192506 2.289758