Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00754 ATGATGGTGGAGTTCCATGGAGAAATCCCAGAAGACTCTCACGATGGAGACGAAGAACAGGAAGAGGAAATTAGCTACGATGATCTTAAGAAACGAATGTGGAAAGACAGACAGAGGTTGAAGAAGATGAAGGAGAATCGTGATCATGAAGAGTTTGAATGGGCGGCTAGAGAAGAAGCTTCTCGCCGGAAGAAAATGTCCAGAGCTCAAGATTCGATTCTCAAGTACATGGATAAGATAATGGAGTCTTGTAAGGCACAAGGGTTTGTTTATGGGATCGTGCCGGAAAAGGGTAAACCGATCACCGGCTCTTCTGAGAGCCTCCGTGAGTGGTGGCAGGACAAGGTTCGGTTCGAACAGGATGCTCCACTGAACATCGCGAATTTACTTCCGAGAGCGATCGAAGAAGCGGGGCTCGATACCAAATCGTTTCTGCACCTACTCCAAGAATTGCAGGACACGACTTTAGGGTCGATTCTGTCGGCTCTGATGCAGCACTGTATTCCGCCGCAGAGGAAATTCCCATTGGACAAAGGTCTGGCGCCGCCTTGGTGGCCGACGGGAAAGGAGCTTTGGTGGGGCGAACAAGGCGTGGCCGGTGGGCAGGGCGTTCCACCATATAAAAAGCCTCATGATCTCAAGAAGTCCTGGAAAGTCAGTGTCCTTGCGGCGGTGATTAAACACATGTCTCTTGATTTGGACAACATGAGGAAATTGGTTCGACAATCGAAGAATTTACAGGCGAAAATGACGGCGAAAGAGACGATTACTTGGACTAAGGTCGTGAATCAAGAAGAAGCTCTCTTGCAATTGACCAAAAACAGCCTCAAAATAACATCCGACGAAGAAGATCAAGAACAACACCACCAAAACAGAGGACCCGAAAACAGGGCAGAACAAGGCACCGGCGGGATTATTACGAAACGGAAGTGCGAATTCGAACGAGAAGCCACAGCTGATTCAGCGGTGTATGCTTGCCAGAACGAATGGTGCCCACAGAGCGAGGCGCCAAAGGGGTTCGCCGACAAGAACGCGAGAACAGAGCACGAGACGCAGTGCGTTTACAGAGCCGACGGCGTGGGGCAATTTTCTAACGAGCAGTCGATCGACACGCATTTGATGAGCGTGGTGGAGTGGATGAACTGGGAGCTGTCGAGGGCAGAGCCGAGCAGCGGCGAGTCGAGGATCGATGACGGCGGATATGGGTCAGGTAGCAGCACAGTGGATGGCAGTGGGTATTGGAAGGGCAGCATCGGAGAGGTAGGGGTGGATGGGTCGGGTAGCAGCACGGTGGAGGATTATGGCAGTGGGTATTGGAAGGGCGGGATTGGAGAGGCAGCGGTGGATGGGTCGGGTAGCAGCACGGTGGATGATTATGGGAGTGGGTTTTGGAAGGGCGGCATCGGAGAGGCAGCAGTGGACGAGGCGTTTGAGATGCATAGAGAGAGTATGGATTTGAATGCGAGTCCGGCGGACGATTTGCAATGCCACCAACAAGATGCAACTTCGATTTGGGATTTGAGATATGAATGGAGTGAAGAGTGA 1545 51.78 MMVEFHGEIPEDSHDGDEEQEEEISYDDLKKRMWKDRQRLKKMKENRDHEEFEWAAREEASRRKKMSRAQDSILKYMDKIMESCKAQGFVYGIVPEKGKPITGSSESLREWWQDKVRFEQDAPLNIANLLPRAIEEAGLDTKSFLHLLQELQDTTLGSILSALMQHCIPPQRKFPLDKGLAPPWWPTGKELWWGEQGVAGGQGVPPYKKPHDLKKSWKVSVLAAVIKHMSLDLDNMRKLVRQSKNLQAKMTAKETITWTKVVNQEEALLQLTKNSLKITSDEEDQEQHHQNRGPENRAEQGTGGIITKRKCEFEREATADSAVYACQNEWCPQSEAPKGFADKNARTEHETQCVYRADGVGQFSNEQSIDTHLMSVVEWMNWELSRAEPSSGESRIDDGGYGSGSSTVDGSGYWKGSIGEVGVDGSGSSTVEDYGSGYWKGGIGEAAVDGSGSSTVDDYGSGFWKGGIGEAAVDEAFEMHRESMDLNASPADDLQCHQQDATSIWDLRYEWSEE 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4366440 4367984 - Carg14208-RA Car04g00754 146179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00754 514 Coils Coil 26 46 - -
Car04g00754 514 MobiDBLite consensus disorder prediction 279 304 - -
Car04g00754 514 MobiDBLite consensus disorder prediction 1 25 - -
Car04g00754 514 Pfam Ethylene insensitive 3 27 266 IPR006957 GO:0005634
Car04g00754 514 MobiDBLite consensus disorder prediction 279 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00754 K14514 EIN3; ethylene-insensitive protein 3 - csv:116406094 675.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00754 Car-Chr4:4366440 Car10g00877 Car-Chr10:5251306 6.08E-111 dispersed
Car16g00716 Car-Chr16:4581370 Car04g00754 Car-Chr4:4366440 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car10g00877 . 2 619 EIL Transcription Factor Family AT2G27050 59.5 5.4e-190 661.4
Car15g00509 . 1 508 EIL Transcription Factor Family AT2G27050 59.7 6.8e-161 564.7
Car04g02399 . 17 533 EIL Transcription Factor Family AT2G27050 57.8 1.4e-158 557.0
Car11g00689 . 2 308 EIL Transcription Factor Family AT2G27050 83.5 1.7e-143 506.9
Car11g00714 . 66 366 EIL Transcription Factor Family AT2G27050 58.2 4.4e-91 332.8
Car11g00689 . 1 302 EIL Transcription Factor Family AT5G21120 54.5 2.9e-86 316.6
Car11g00714 . 73 327 EIL Transcription Factor Family AT5G21120 52.3 9.6e-74 275.0
Car11g00714 . 58 573 EIL Transcription Factor Family AT1G73730 53.5 8.0e-135 478.0
Car10g00877 . 36 334 EIL Transcription Factor Family AT1G73730 62.2 7.3e-104 375.2
Car11g00689 . 36 301 EIL Transcription Factor Family AT1G73730 69.0 2.8e-103 373.2
Car04g02399 . 49 312 EIL Transcription Factor Family AT1G73730 67.7 4.9e-100 362.5
Car15g00509 . 40 335 EIL Transcription Factor Family AT1G73730 60.4 2.4e-99 360.1
Car16g00716 . 21 270 EIL Transcription Factor Family AT1G73730 54.5 2.2e-76 283.9
Car04g00754 . 21 270 EIL Transcription Factor Family AT1G73730 54.9 2.7e-74 276.9
Car10g00877 . 3 619 EIL Transcription Factor Family AT3G20770 62.2 1.5e-206 716.5
Car04g02399 . 16 619 EIL Transcription Factor Family AT3G20770 51.2 1.1e-161 567.4
Car15g00509 . 7 512 EIL Transcription Factor Family AT3G20770 59.4 3.1e-159 559.3
Car11g00689 . 3 308 EIL Transcription Factor Family AT3G20770 84.8 7.6e-150 528.1
Car11g00714 . 66 326 EIL Transcription Factor Family AT3G20770 64.4 7.3e-92 335.5
Car11g00689 . 44 296 EIL Transcription Factor Family AT5G65100 55.0 3.7e-79 293.1
Car11g00714 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 1.8e-70 264.2
Car16g00716 . 19 349 EIL Transcription Factor Family AT5G10120 59.4 1.1e-105 380.9
Car04g00754 . 18 355 EIL Transcription Factor Family AT5G10120 58.2 6.9e-103 371.7
Car11g00689 . 43 298 EIL Transcription Factor Family AT5G10120 58.5 7.9e-83 305.1
Car11g00714 . 75 290 EIL Transcription Factor Family AT5G10120 57.9 4.8e-72 269.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3301 PF04873 EIN3 2.50E-106 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00754 Car_Chr04 FPKM 40.498993 40.983345 39.049156 41.926525 69.798698 70.301979 70.551697 39.892506 47.109386 48.267109