Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00784 ATGGAGTTCGAGGATCACGACGAAGAAGAAGACATGGAAATGGAAGCTCCAACAAACTACGACAAACCACTTCTCCAAACCCCTCCTCCTCCTCCTCCACTTTCCCGCCTCAACAAAACCCCATCTCCGCTCCACTCCGACCCCCCTCCTCCCCCCCTCTACAAAGAGTGCTTAAAAAACCACGCCGTCTCCATCGGTGGCCACTCCCTCGACGGCTGCGGCGAGTTCATGCCCGCCGGCCCAAACGGCTCTCTCGACGCACTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAAGACATTACCACCACCAACGACGACAACGGAGAATCACCACCGTTCATCTTATCCAACCCACCACCAACCGCCCAGTTCGTTCCCTACTGGCGTGCTCCAGCTGGCTACCTCCACGTGGCACCCCAACGACGAATGCTGGCGCTCCCGTCGCCTTCAAGTGGAGACGGCGGATGCAGAAAGAGGGTAAGGACAAAATTCACTGAGGAGCAAAAGGAGAAGATGCTGGTGATGGCGGAGAAGCTGGATTGGCGTATTCAAAAGAACGATGAAGCGGCGGTGATGGAATTCTGCAACGAAATCGGGGTGAAACGCCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAAGGACTCTGAACACAACAAATTCTCGTAA 693 54.98 MEFEDHDEEEDMEMEAPTNYDKPLLQTPPPPPPLSRLNKTPSPLHSDPPPPPLYKECLKNHAVSIGGHSLDGCGEFMPAGPNGSLDALKCAACNCHRNFHRKDITTTNDDNGESPPFILSNPPPTAQFVPYWRAPAGYLHVAPQRRMLALPSPSSGDGGCRKRVRTKFTEEQKEKMLVMAEKLDWRIQKNDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRKDSEHNKFS 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4530244 4530936 - Carg14238-RA Car04g00784 146209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00784 230 Pfam ZF-HD protein dimerisation region 53 104 IPR006456 -
Car04g00784 230 MobiDBLite consensus disorder prediction 23 53 - -
Car04g00784 230 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
Car04g00784 230 MobiDBLite consensus disorder prediction 1 15 - -
Car04g00784 230 MobiDBLite consensus disorder prediction 1 53 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00761 Car-Chr3:6404186 Car04g00784 Car-Chr4:4530244 3.08E-75 dispersed
Car04g00784 Car-Chr4:4530244 Car05g00476 Car-Chr5:2706441 9.02E-58 dispersed
Car13g00803 Car-Chr13:8850633 Car04g00784 Car-Chr4:4530244 1.07E-39 dispersed
Car18g00081 Car-Chr18:434037 Car04g00784 Car-Chr4:4530244 1.46E-42 dispersed
Car12g00201 Car-Chr12:1262779 Car04g00784 Car-Chr4:4530244 8.67E-28 wgd
Car04g00784 Car-Chr4:4530244 Car07g00499 Car-Chr7:2500572 2.29E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3302 PF04770 ZF-HD_dimer 5.10E-29 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00784 - - cpep:111809080 427.943