Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00792 ATGGGTTTGGATGATGTTTCTCAAACAAGCTTGGTTTTGGGGTTGGGGATATCAGAAGCTGCTTCTCCAATTATTAACAACTTGAAGAACAACAAGAAGAAGAAGAACAACAAGAATCCTACTTCACTTGAGTTTGAGCCTTGTGCTTTGACTTTGGGATTTTCAGGCGATGTTGATCCTCCTCGTCATCATCCTCATCATCATCATCATTTGTATCGCCAAGCTTCCCCTCATAGCAGCGCTGTTTGTTCTTCCTTCTCCGGGGGCGGTGGCGGTGGGATTAAAAGGGAGAGAGACCTCAGCAGTGAAGAAGTTGAATTGGAGAGAGTTTGTTGTAGAGTTAGTGATGAAGATGAAGATGGTTGTAATACTAGGAAGAAGCTTAGGCTTTCTAAACAACAATCCGCGCTATTGGAAGAGAGTTTCAAACAAAATAGCACTCTCAACCCCAAACAAAAGCAAACCTTAGCCAGACACCTAAACCTACGCCCAAGACAAGTGGAAGTATGGTTTCAAAATAGGAGAGCTCGAACAAAAATGAAACAAACAGAAGTAGACTGTGAGTTCTTGAAGAAATGTTGTGAGACGTTGACAAACGAAAATAGAAGACTACAGAAGGAGCTTCAAGAATTGAAAGCGCTAAAGCTCGCACACCCGCTGTACATGCACATGCCAGCAGCAACGCTAACCATGTGCCCATCCTGCGAAAGGGTGGGTGGCGTTGGCGTTGGCGTTGGCGATGGCGCTTCCAAACCCAAATTTTCAATGGCTCCCAAGCCCCACTTTTACAACCCCTTCTCCAATCCTTCAGCCGCATGTTAG 822 45.13 MGLDDVSQTSLVLGLGISEAASPIINNLKNNKKKKNNKNPTSLEFEPCALTLGFSGDVDPPRHHPHHHHHLYRQASPHSSAVCSSFSGGGGGGIKRERDLSSEEVELERVCCRVSDEDEDGCNTRKKLRLSKQQSALLEESFKQNSTLNPKQKQTLARHLNLRPRQVEVWFQNRRARTKMKQTEVDCEFLKKCCETLTNENRRLQKELQELKALKLAHPLYMHMPAATLTMCPSCERVGGVGVGVGDGASKPKFSMAPKPHFYNPFSNPSAAC 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4575375 4577097 - Carg14246-RA Car04g00792 146217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00792 273 Pfam Homeodomain 125 179 IPR001356 GO:0003677
Car04g00792 273 Pfam Homeobox associated leucine zipper 181 215 IPR003106 GO:0006355|GO:0043565
Car04g00792 273 ProSitePatterns 'Homeobox' domain signature. 156 179 IPR017970 GO:0000981|GO:0006355
Car04g00792 273 ProSiteProfiles 'Homeobox' domain profile. 121 181 IPR001356 GO:0003677
Car04g00792 273 Coils Coil 187 217 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00800 Car-Chr3:6593510 Car04g00792 Car-Chr4:4575375 2.36E-99 dispersed
Car04g00792 Car-Chr4:4575375 Car17g00882 Car-Chr17:7382958 6.97E-75 dispersed
Car04g00792 Car-Chr4:4575375 Car07g00543 Car-Chr7:2754898 1.31E-106 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3305 PF00046 Homeodomain 6.90E-16 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00792 K09338 - csv:101205848 335.495