Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00798 ATGGACATGAACATCAACAATTCTTCGGGGCAATTCAAAGTCAGACTACAAAGAAGTGGTGGAAATGTCGTGATGGATAATGGTATTGTCCAAGTTACTCTGTCCACCCCAGATGGTGACGTGGTTGGATTGAGCTACAATGGAGTCGATAACATTCTGGACACCAAAACCGAAGCGCCGAACAGAGGCTACTGGGACGCCGTATGGAACAACCCAAACGAACCCATTAACACTGACAGATTACTAGGAACCGCGTTTAAAGTGATAGTATCCACCGACGAGCAACTGGAAATCTCGTTTGTCAAAACATGGAGCGTTGCAGTTGGGAACAAGAACGCCCCTGTAAATGTAGACAAAAGGTTCGTGTTGCTGAGAGGAAGTTCTGGGTTTTATACGTATGCCGTATTCGAGAGGCTGACGGGGTGGCCGGAGATTGAAATGGATCAAGTTAGGATCGTTTTCAGACCTCAGAAAAAAATGTTTGATTACATGGCTGTATCGGACAGTAGGCAGAGAGTGATGCCGACAATGGACGACCGCAATAATGGTGATCCATTGCAATATCCTGAGGCTGTTCTTTTGACCAATCCTGCCAATGAGAAACTCAGAGGAGAGGTAGATGACAAGTACATGTACTCAATAGAGGACAAGGACAACCTACTTCACGGCTGGATCTCCAGAAATCCACCGACTGGATTCTGGATGATCACTCCTAGTGACGAGTTCCGCGTCGCCGGTCCGGTCAAGCAGGATCTGACCTCCCACGCCGGCCCCATCACTCTCTCCATGTTCGCTAGCACCCACTACGCTGGAACGGATGTGGGCATGAAATTTGCAGAAGGAGAGCCTTGGAAGAAGGTCTTCGGCCCTGTATTTGTCTATCTCAACTCTGCTTCCCCTAAGGAGGATTACCGTTCTCTATGGCAAGATGCCAAACAACAGCTGGCAACGGAAATCAGTAAGTGGCCCTATACTTTTCCTCAATCAGAAGACTTCCCTTCTTCTGCCCAAAGAGGGAGCGTCGCCGGCCGGTTACTAATCCGTGATGGGTCTATCAGCGACAGACTTTTGCGTGCGAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTGGGATCTTGGCAAAGGGAAAGCAAGGGCTATCAATTCTGGACTCAAGCTGACAGTCACGGCAGCTTCTTAATCAATAACGTCCGAGAAGGAGTTTATAATCTTTATGCTTTTGTTCCTGGCTTTATTGGAGACTACAAGTACGAGGGAAATATAACAATCAAGGCTGGGTCTAAAATTAAATTGGATGAGATGGTGTTTGATCCGCCGAGACAGGGCCCAACCATCTGGGAGATCGGCATTCCCGACCGCACAGCAGCGGAGTTTTATGTGCCCGACCCTTTTCCGACTCTCATGAATAAACTATACATTGACCATGATGACAAGTTCAGACAATATGGGTTGTGGGAACGTTATGCGGCTATGTATCCGAATAATGATCTTGTGTTTACTGTTGGTGTGGATAATTATACCCAGGACTGGTTCTATGCGCATGTTACCAGGGATGTGGGGAATCAAACATACGAAGCAACCACATGGGAGGTCAGATTTTCATTGCAATCTGTGAACCAAACGGCAAATTACACATTGCAAATTGCATTGGCATCTGCTGCTGATTGCGAGTTACAGGTTCGGTTAAACGATAAAACGTCGAGCCAACCCGGGTTTACGACAGGAAGGATCGGAAGGGACAACGCAATTGCAAGGCATGGGATTCATGGGCTTTACTGGTTATACTCGGTTCCTTTCCCTGGCACTCAGTTTCTGAAAGGGAACAACTCCATGTATTTCACTCAGGCAAGAAGCCACGGCCCTTTCCAAGGTCTCATGTATGACTACGTTCGACTCGAAGCTCCACCTCGAACATAA 1923 47.58 MDMNINNSSGQFKVRLQRSGGNVVMDNGIVQVTLSTPDGDVVGLSYNGVDNILDTKTEAPNRGYWDAVWNNPNEPINTDRLLGTAFKVIVSTDEQLEISFVKTWSVAVGNKNAPVNVDKRFVLLRGSSGFYTYAVFERLTGWPEIEMDQVRIVFRPQKKMFDYMAVSDSRQRVMPTMDDRNNGDPLQYPEAVLLTNPANEKLRGEVDDKYMYSIEDKDNLLHGWISRNPPTGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFASTHYAGTDVGMKFAEGEPWKKVFGPVFVYLNSASPKEDYRSLWQDAKQQLATEISKWPYTFPQSEDFPSSAQRGSVAGRLLIRDGSISDRLLRASNAFVGLALPGPVGSWQRESKGYQFWTQADSHGSFLINNVREGVYNLYAFVPGFIGDYKYEGNITIKAGSKIKLDEMVFDPPRQGPTIWEIGIPDRTAAEFYVPDPFPTLMNKLYIDHDDKFRQYGLWERYAAMYPNNDLVFTVGVDNYTQDWFYAHVTRDVGNQTYEATTWEVRFSLQSVNQTANYTLQIALASAADCELQVRLNDKTSSQPGFTTGRIGRDNAIARHGIHGLYWLYSVPFPGTQFLKGNNSMYFTQARSHGPFQGLMYDYVRLEAPPRT 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4620517 4623722 + Carg14252-RA Car04g00798 146223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00798 640 Pfam Polysaccharide lyase family 4, domain II 360 432 IPR029413 -
Car04g00798 640 Pfam Polysaccharide lyase family 4, domain III 446 634 IPR029411 -
Car04g00798 640 Pfam Rhamnogalacturonate lyase family 7 206 IPR010325 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00778 Car-Chr3:6488716 Car04g00798 Car-Chr4:4620517 0 dispersed
Car04g00798 Car-Chr4:4620517 Car12g00194 Car-Chr12:1225621 0 dispersed
Car04g00798 Car-Chr4:4620517 Car07g00516 Car-Chr7:2605890 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00798 K18195 - csv:101215252 1098.19