Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00802 ATGGCTCCTGCGACTAACTGGCTTTCCTTTTCCCTCTCTCCCATTGAAATGCTTCGCTCTGCTGACTCCCAGTTTGTTCCTTATGAAACCTCCTCCACCGCCTCTCCTCACTATCTCTTGGACAACTTCTACTCCAATAATGGATGGAGTAATAGTACTAATGCTCACCCCAAATCATCATCCCAACTTTTCTTCATGGATGGAGATGAAAACAATGAGGTTATCAAAGAAGATCATCATAATCAATCGACACCCGCCATTTATACGAGCTATCTTCATCCACAAACCCACCACCAACCCAAACTGGAAGATTTCCTCGGCGATTCCTCGTCGATGGTGCGGTATTCCGACAGCCAGACGGAGACTCAAGATTCGTCTTTGACTCATATTTACGACCATGGCTCCGCACCCTATTTTGGGGACCAACAGGATCTCAAAACCATTGCGGCGTTTCGTGCTTTTTCTGGGAACTCCGGCTCTGAAGTGGACGATTCGGCTTCTATGGGGAGAACCCAGATCGCGGCCGGTGCTCATTCTATTGAGTCTTCGGTTAGAAATGAGTTGGGGACTTTCTCTAGCTGCCCCACGGGTGCTCTTTCTCTCGCCGTCGCGCAGAGCTCTGACACAGTGGCAGCTGGGGGTGTCGTGGCGGTTGACTCCGATTCGTCCAAGAAAATTGCCGACACTTTTGGCCAGCGAACATCAATTTACAGAGGAGTCACTAGGCACAGGTGGACGGGTAGATACGAGGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGGTGGGTATGATAAGGAAGATAAGGCAGCTAGGGCTTATGATTTGGCGGCTTTGAAGTACTGGGGTCCCACTGCAACCACCAATTTTCCTGTTTCGAATTACGCCAAAGAATTGGAAGAGATGAAACATGTCACGAAGCAAGAGTTTATTGCATCTTTGCGAAGAAAAAGCAGTGGTTTTTCGAGGGGTGCGTCTATTTACAGAGGTGTGACGAGGCATCATCAGCAAGGTCGATGGCAGGCGAGGATTGGGCGTGTTGCAGGGAATAAGGATTTGTATCTCGGGACATTTGCTACTGAGGAGGAAGCTGCTGAGGCGTATGATATAGCAGCGATCAAGTTTAGGGGTTTGAATGCGGTGACGAACTTCGAGATGAATCGATACGATGTGGAGGCTATTGCGAAGAGTGCACTGCCAATTGGGGGAGCTGCAAAAAGGCTGAAGCTTTGCCTTGAATCGGATCAGAAGCAGATGTCAAATCATGATCAAGCAGCCCAATGCAGCAGTGGAAGCAACAGCATCAACTTCGGCGCCCCTATTCAGTCTATGCCACCCATCCCCTGTGGAATTCCATATGATACTGCAGCCATGCTGTATCACCATAATTACTTCCATCATCTTCAACCTAACCCTCTCGGCTCGTCGGAGTCGACCACCCCAGCCATTGGAGGATCTACCATGGCACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCAC 1524 49.54 MAPATNWLSFSLSPIEMLRSADSQFVPYETSSTASPHYLLDNFYSNNGWSNSTNAHPKSSSQLFFMDGDENNEVIKEDHHNQSTPAIYTSYLHPQTHHQPKLEDFLGDSSSMVRYSDSQTETQDSSLTHIYDHGSAPYFGDQQDLKTIAAFRAFSGNSGSEVDDSASMGRTQIAAGAHSIESSVRNELGTFSSCPTGALSLAVAQSSDTVAAGGVVAVDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARAYDLAALKYWGPTATTNFPVSNYAKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMNRYDVEAIAKSALPIGGAAKRLKLCLESDQKQMSNHDQAAQCSSGSNSINFGAPIQSMPPIPCGIPYDTAAMLYHHNYFHHLQPNPLGSSESTTPAIGGSTMAPQAAEFFVWPH 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4641132 4644626 - Carg14256-RA Car04g00802 146227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00802 508 ProSiteProfiles AP2/ERF domain profile. 335 393 IPR001471 GO:0003700|GO:0006355
Car04g00802 508 Pfam AP2 domain 236 291 IPR001471 GO:0003700|GO:0006355
Car04g00802 508 Pfam AP2 domain 335 385 IPR001471 GO:0003700|GO:0006355
Car04g00802 508 ProSiteProfiles AP2/ERF domain profile. 236 299 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00802 Car-Chr4:4641132 Car16g00775 Car-Chr16:4945950 0 dispersed
Car04g00802 Car-Chr4:4641132 Car12g00953 Car-Chr12:9641161 1.46E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3307 PF00847 AP2 1.20E-08 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00802 K09285 - csv:101217714 784.252