Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00815 ATGCTTATAGAGAAGGAGAACCTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCCCCTGAGCTCCCGGAACCAGCATTAGGCATAAACTTTGCGAGGGATGGGATGCAGGAGAAAGATTGGTTATCGTTGGTTGCAGTTCACAGTGATTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGATTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCAAGTGTATTTGAAGTTGTAAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATAGCAGCAAAAGCAAATCGGGTGGGAAGATGCAGTCCAGGCAATTGGAGTCCCATAGCAAGGGAGTTAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGAAGATGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAATTACGGCAACGATGAATTCTGGATTTGTTGTGATGTATGTGAAAGATGGTTCCATGGAAAGTGTGTGAAGATTACACCAGCCAAGGCCGAGCATATCAAACAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGTAAGGGTTTGA 651 45.31 MLIEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPSVFEVVSGNGKQSKEQSATHNNSSKSKSGGKMQSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRVRV 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4749888 4755966 + Carg25865-RA Car04g00815 146240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00815 216 MobiDBLite consensus disorder prediction 144 161 - -
Car04g00815 216 Pfam Alfin 4 98 IPR021998 GO:0006355|GO:0042393
Car04g00815 216 Pfam PHD-finger 163 212 IPR019787 -
Car04g00815 216 MobiDBLite consensus disorder prediction 99 132 - -
Car04g00815 216 MobiDBLite consensus disorder prediction 99 162 - -
Car04g00815 216 ProSiteProfiles Zinc finger PHD-type profile. 160 212 IPR019787 -
Car04g00815 216 ProSitePatterns Zinc finger PHD-type signature. 163 209 IPR019786 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00815 Car-Chr4:4749888 Car17g00661 Car-Chr17:6128488 4.23E-95 dispersed
Car16g00783 Car-Chr16:5009989 Car04g00815 Car-Chr4:4749888 4.36E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3309 PF12165 Alfin 1.00E-49 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00815 - - cpep:111798014 401.364