Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00842 ATGTTGTTTTTCCTTGTTTTTACTTTCTTCTCTCTTCTAGGCCCCTCTTCTTCCCATAGTCTGGTCAGTGATTTCCATGTCTTGCTTGCTCTGAAACAAGGGTTTCAATTCTCGGACTCTGCTGTGCTAAGCACATGGACTGCGTCAAACTTTAGCTCCGTTTGTTCGTGGGTCGGGATTCAGTGCTCTGACAAACGAGTTGTGTCGGTTGACTTGACAGATTTGAGCCTTGGAGGCTCTGTTTCACCGTTTATTTCTAGTCTTGACCAACTTTCTCAGTTGTCTGTGGCTGGAAATAACTTCTCCGGTAGCATTGAAGTAGTGAATTTGAGTTATCTCCGATTCCTTAACATCTCAAACAACCAGTTTACTGGGACTCTGGACTGGAACTTTTCGAGTCTGCCAAACTTAGAAGTGTTCGATGCTTATAACAACAACTTCACTGCTGTGCTCCCCACTGAGATTTTGAACTTACAGAACCTCAAGTACTTGGACCTTGGAGGTAACTTTTTCCATGGAACAATCCCTGAAAGCTATGGCAATTTCGAAGGATTGCAATATCTTTCTCTTGCAGGAAATGATTTGGTCGGGAAAATCCCAGGTGAGTTGGGAAATCTTACAAATTTGAGAGAAATTTACTTGGGTCATTACAATGTTTTCGAAGGTGGGATTCCACCCGAGCTCGGGAAGTTGGAGAATTTGGTTATTATGGAGATTACAGACTGCGGTTTGGACGGTCAAATTCCTCATGACCTCGGAAATTTGAAGGCCTTGAATACTCTATATTTGCATACGAATCTACTCTCAGGTTCAGTCCCGAAGCAGTTAGGCAACTTGACAAACTTGGTCTTTCTCGATTTATCCAACAATGCACTCACAGGAGAAATCCCATCTGAGTTTGTTGATCTTAAGCAACTCAAGCTTTTCAACCTCTTCATGAACAAACTACACGGATCTATTCCAGATTACGTAGCAGATTTGCCGAACTTGGAGAGCTTGGCGCTGTGGATGAACAACTTCACCGGCACAATCCCAAAGAATCTCGGCCAAAATGGGAGGCTTCAGCTCCTTGATTTGTCAACGAACAAGCTCACGGGTACAATCCCTCAGGATTTGTGTTCATCGAACCAGCTGAAAATATTGATTCTGATGAACAACTTCCTGTTTGGGCCAATCCCTGATGGCTTGGGGACATGTACCAGTCTAACAAAAGTGAGGTTGGGGCAGAACTATCTGAACGGAAGCATTCCTGATGGCTTCATTTACTTGCCTCAGCTAAATCTAGCTGAGTTTCAGGACAATTACCTTTCAGGTACACTTTCAGAGAATTGGGAGAGTTCATCAAAACCCATCAAATTAGGGCAACTTAATCTCTCTAACAATCTTCTGTCTGGAACTTTACCATTTTCATTTTCTAATTTCTCTTCTCTGCAAATTCTCCTCCTTGATGGCAATCAGTTTTATGGTACAATTCCTCCTTCCATCGGGGAACTCAATGAACTTCTGAAGCTCGATCTTAGCAGAAACTCACTTTCAGGTGAAATTCCACCTGAAATTGGGAATTGTATCCATCTCACTTACCTTGATTTGAGCAAGAACAACCTCTCTGGCCCAATTCCACCTGAAATTTCCAATGCACATATTCTCAATTACCTCAACTTGTCGAGAAATCACCTAAATCAATCCCTACCGAAATCAATAGGGGCCATGAAGAGCCTCACGATTGCAGATTTTTCCTTCAATGATTTCTCCGGAAAGCTACCGGAATCAGGACAACTTGCCTTCTTCAATGCTTCGTCTTTCGCCGGAAATCCTCAACTCTGCGGATCTCTCCTCAACAATCCCTGCAACTTCGCAACAACGGCAACAAAATCGGGAAAAACTCCGGCGTATTTCAAGCTAATCTTCGCCCTTGGCCTACTGATTTGCTCCCTAGTGTTTGCCATAGCCGCAATAGTCAAAGCAAGATCGATTAAAAGAAACGGCTCAAGTTCGTGGAAAATGACCTCATTCCAAAAGCTCGATTTCACCGTCTACGACGTTTTAGAGTGCGTGAAAGATGGAAACGTGATCGGAAGAGGCGGCGCCGGCATCGTCTACCACGGAAAAATGCCGAATGGAGTTGAAATCGCAGTGAAGAAACTCCTAGGGTTCGGCCCCAACAGTCACGACCACGGATTCCGAGCCGAAATCCAAACCCTAGGCAACATTCGACACCGGAACATCGTCAGATTATTCGCTTTCTGCTCCAATAAAGAGACAAATCTCCTCGTATACGAATACATGAGGAACGGAAGCTTAGGCGAAGCACTCCACGGAAAAAAAGCCTCATTCCTCGGATGGAATTTGAGGTACAAAATCGCCATTCAAGCCGCTCAAGGTCTCTGCTATCTCCACCACGATTGTTCTCCACTAATCGTCCACCGAGACGTGAAATCGAACAACATTCTCTTGAATTCGAACTTCGAAGCTCACGTCGCCGATTTCGGACTGGCGAAGTTCATGTTCGACGGCGGCGCATCGGAATGCATGTCGGTTATCGCCGGATCTTACGGCTACATCGCTCCTGGTACGTTTTTCCTTCTTTCTTTTTTCATTTGCCTCTTACAGTTTTTGTAA 2619 44.48 MLFFLVFTFFSLLGPSSSHSLVSDFHVLLALKQGFQFSDSAVLSTWTASNFSSVCSWVGIQCSDKRVVSVDLTDLSLGGSVSPFISSLDQLSQLSVAGNNFSGSIEVVNLSYLRFLNISNNQFTGTLDWNFSSLPNLEVFDAYNNNFTAVLPTEILNLQNLKYLDLGGNFFHGTIPESYGNFEGLQYLSLAGNDLVGKIPGELGNLTNLREIYLGHYNVFEGGIPPELGKLENLVIMEITDCGLDGQIPHDLGNLKALNTLYLHTNLLSGSVPKQLGNLTNLVFLDLSNNALTGEIPSEFVDLKQLKLFNLFMNKLHGSIPDYVADLPNLESLALWMNNFTGTIPKNLGQNGRLQLLDLSTNKLTGTIPQDLCSSNQLKILILMNNFLFGPIPDGLGTCTSLTKVRLGQNYLNGSIPDGFIYLPQLNLAEFQDNYLSGTLSENWESSSKPIKLGQLNLSNNLLSGTLPFSFSNFSSLQILLLDGNQFYGTIPPSIGELNELLKLDLSRNSLSGEIPPEIGNCIHLTYLDLSKNNLSGPIPPEISNAHILNYLNLSRNHLNQSLPKSIGAMKSLTIADFSFNDFSGKLPESGQLAFFNASSFAGNPQLCGSLLNNPCNFATTATKSGKTPAYFKLIFALGLLICSLVFAIAAIVKARSIKRNGSSSWKMTSFQKLDFTVYDVLECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGPNSHDHGFRAEIQTLGNIRHRNIVRLFAFCSNKETNLLVYEYMRNGSLGEALHGKKASFLGWNLRYKIAIQAAQGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFMFDGGASECMSVIAGSYGYIAPGTFFLLSFFICLLQFL 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4908300 4910918 + Carg00017-RA Car04g00842 146267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00842 872 Pfam Protein kinase domain 687 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00842 872 Pfam Leucine Rich Repeat 113 134 IPR001611 GO:0005515
Car04g00842 872 Pfam Leucine rich repeat 160 216 IPR001611 GO:0005515
Car04g00842 872 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672|GO:0006468
Car04g00842 872 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Car04g00842 872 ProSiteProfiles Protein kinase domain profile. 685 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00842 Car-Chr4:4908300 Car07g00002 Car-Chr7:25091 0 dispersed
Car04g00842 Car-Chr4:4908300 Car07g01339 Car-Chr7:8425717 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88788 PF00069 Pkinase 2.00E-31 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00842 - - csv:101215633 1581.62