Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car04g00850 | ATGGTGGTCGGTGGGTCCTTCGTCCATGGGGACGGTGGTGCTTGGCTTCATGCTCATGCAACTTTCTATGGAGCTGATCAAAACCCTACTAGCCTTGGAGGAGCATGTGGTTACGACAATACATTTCATGCCGGATTTGGAATAAACACGGCGGCGGTGAGCGGCGCACTTTTCAGAGGAGGAGAGGCTTGCGGCGCTTGCTTCCTAGTAATTTGCAACTACAACGTGGACCCCAAGTGGTGCCTCCGCCGCCGCGCCGTCGCAATCACCGCCACGAACTTCTGCCCCTCCAATAACAACGGGGGCTGGTGCGACCCACCTCGCGCGCACTTCGACATGTCGTCACCTGCCTTTCTTACCATTGCTCGGCAAGGCAACGAAGGGATCGTCCCTGTCCTTTACAAGAGGGTAAGTTGTAGAAGGAAGGGAGGAGTTCGATTCACATTGAGAGGACAATCAAACTTCAATATGGTAATGATATCGAACGTCGGTGGCAGCGGCGACATAAAGGCTGCATGGGTTAAGGGGTCGAGGACGAGGACGTGGATGCCCATGCATCGTAATTGGGGCGCAAACTGGCAAGCCAACGTCGACCTTCGAAACCAAAGAATGTCATTTAAGGTTACTCTAATAGATGGGAGGACATTGGATTTTGTCAATGTGGTTCCTTCCTCTTGGAGGTTTGGACAGACGTTTTCTTCCTTGGTTCAGTTTTCTTAG | 720 | 52.36 | MVVGGSFVHGDGGAWLHAHATFYGADQNPTSLGGACGYDNTFHAGFGINTAAVSGALFRGGEACGACFLVICNYNVDPKWCLRRRAVAITATNFCPSNNNGGWCDPPRAHFDMSSPAFLTIARQGNEGIVPVLYKRVSCRRKGGVRFTLRGQSNFNMVMISNVGGSGDIKAAWVKGSRTRTWMPMHRNWGANWQANVDLRNQRMSFKVTLIDGRTLDFVNVVPSSWRFGQTFSSLVQFS | 239 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 4936749 | 4937896 | + | Carg00025-RA | Car04g00850 | 146275 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car04g00850 | 239 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 154 | 234 | IPR007117 | - | |
| Car04g00850 | 239 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 33 | 144 | IPR007112 | - | |
| Car04g00850 | 239 | Pfam | Expansin C-terminal domain | 145 | 223 | IPR007117 | - | |
| Car04g00850 | 239 | Pfam | Lytic transglycolase | 50 | 134 | IPR009009 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g00850 | Car-Chr4:4936749 | Car04g00992 | Car-Chr4:5714487 | 2.82E-84 | dispersed | |
| Car04g00850 | Car-Chr4:4936749 | Car10g00188 | Car-Chr10:902985 | 5.86E-86 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car04g00850 | - | - | bhj:120091876 | 470.314 |