Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00865 ATGAAAGAGGAGTCAACTGGATTGATCATTGGAATTTCGATTGGAGTGGTGATTGGAGTTCTTTTGGCGATTCTTGCTCTATTCTGCTTTAGATACCACAGGAAGCGGTTGCAGATTGGTAATAGCAGTTCAAGGAGGGCAGCTAATGTTCCTATTCGAACAAACGGAGCTGATGCTTGTAGTATTCTATCAGACTCAACAGTGGCTCCAGAATCACCCGTGAAGTCCAGCCAGAATGGTATATCCTCATGGCTTGACGGATTTAAGAAAAGCTGCGTGATCTCATCTGGGATGCCTGAATATTCTTTTAAAGATCTCCAAAAAGCAACCGGAAATTTTACTAGTGTAATAGGACAAGGAGCATTTGGTCCTGTTTATAAAGCTACCTTGCCGTCTGGAGAGACTGTTGCTGTGAAAGTGCTTGCAACCAATTCTAAACAAGGAGAGAAAGAATTTCAGACAGAGGTGATGTTATTGGGAAGATTGCATCATAGAAACCTCGTGAATTTGATTGGATACTGTGCTGAAAGAGGCGAGCATATGCTTGTGTATGTCTACATGAGTAAAGGCAGCCTAGCTTCTCACTTATATAGTGATAAGAATGGATTACTAAGTTGGAATGTAAGAGTTCGGATAGCTTTAGATGTAGCAAGGGGTTTGGAGTATCTTCATGATGGGGCAGTTCCTCCAGTTATTCACCGGGATATCAAATCAGCCAACATTTTGTTGGATCAGTCCATGAGGGCAAGGAAAAGCGATGTTTACAGCTTTGGAGTATTACTTTTCGAGATTATTGCTGGCAGAAATCCTCAACAGGGCCTTATGGAATATGTTGAGCTTGCTGCCATGAATTCTGATGGGAAAGTTGGGTGGGAAGAGCTTGTTGATTCCCGTCTGGATGGAAACTTCGACGCTCAAGAGCTGAATGAAGTAGCAGCTCTGGCATACAAATCCATTAACCGTGTTCCGAAAAAACGACCTTCAATGAGAGACAACGTACAAGTTCTGTCCCGAATTCTAAAACAAAGACAGAACAATAGATTTAACCAAAATATGGTGTCAACGACAAGAGATGAAATTGGCATTGATGTGGATCAAGTAGAAAGCAGGAGTCCGAGGATTCCAATGCCTGAACACCAACGACAACAGTCCACGGATAGTACAGCCGAATCATTTGATGTTTAG 1185 42.36 MKEESTGLIIGISIGVVIGVLLAILALFCFRYHRKRLQIGNSSSRRAANVPIRTNGADACSILSDSTVAPESPVKSSQNGISSWLDGFKKSCVISSGMPEYSFKDLQKATGNFTSVIGQGAFGPVYKATLPSGETVAVKVLATNSKQGEKEFQTEVMLLGRLHHRNLVNLIGYCAERGEHMLVYVYMSKGSLASHLYSDKNGLLSWNVRVRIALDVARGLEYLHDGAVPPVIHRDIKSANILLDQSMRARKSDVYSFGVLLFEIIAGRNPQQGLMEYVELAAMNSDGKVGWEELVDSRLDGNFDAQELNEVAALAYKSINRVPKKRPSMRDNVQVLSRILKQRQNNRFNQNMVSTTRDEIGIDVDQVESRSPRIPMPEHQRQQSTDSTAESFDV 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4982848 4985351 - Carg00040-RA Car04g00865 146290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00865 394 MobiDBLite consensus disorder prediction 376 394 - -
Car04g00865 394 MobiDBLite consensus disorder prediction 361 394 - -
Car04g00865 394 ProSiteProfiles Protein kinase domain profile. 111 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00865 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Car04g00865 394 Pfam Protein tyrosine and serine/threonine kinase 248 331 IPR001245 GO:0004672|GO:0006468
Car04g00865 394 Pfam Protein tyrosine and serine/threonine kinase 113 247 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00865 - - - csv:101209720 644.425
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g00865 Car09g00834 CCT
Car04g00865 Car16g00570 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00865 Car-Chr4:4982848 Car16g00570 Car-Chr16:3599664 0 dispersed
Car16g00832 Car-Chr16:5497701 Car04g00865 Car-Chr4:4982848 5.37E-175 wgd
Car04g00865 Car-Chr4:4982848 Car09g00834 Car-Chr9:5090037 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g406 Blo03g00588 . Bda07g00333 . . . . . . . Cma01g01158 Cma09g00918 . Car09g00834 . Cpe06g00738 Cpe02g00744 Bhi09g01956 . . . . Mch11g1145 . . . . . . . . . Cone9ag0109 . . Lsi04g01252 . Chy04g01023 . . . . . Bpe11g00519 . . Bma14g00362 . Cmo01g01212 Cmo09g00912 Cma04g01014 . Car04g00865 Car16g00570 Cpe14g00713 Cpe01g00836 . . . . . . . Cla05g01548 . . . . . . . . . Cme04g00791
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001530 1 4 1 1 1 1 4 1 2 2 2 1 4 2 1 4 0 0 5 2 2 1 0 0 1 2 0 0 0 1 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88789 PF07714 PK_Tyr_Ser-Thr 1.50E-29 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00865 Car_Chr04 FPKM 2.497312 0.0 8.193198 9.162515 4.08145 4.664114 6.717804 10.222857 10.057704 13.629892