Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00870 TGTTTTGAGCCCAAGATTGAGGTCCATTGGCCGTCGGAAGTATTCGATCCGATTCTCCCTGCCGCAGAAGCCGATTACGAGGGCGAAACTCATTTCCAATGTTCTTCACATAATTTTGGAGCTATGGAGCATCTGTTCGAAGCTTACTCAAATACTTCTGACGAAGACAACCAAGAAGATGAACCTCAGCCCAAGCGTTTAGCCCTCCCCTCTTCAACATCGAAGAGACCCGAACATTCCCAATTCCAGCCGATGTTCCGGCCGTCGAATTGCCCGGACTCCACTTCAGAGCCTCAAAAGGAGATTATGGTTCCTGGACGCTACATTTCCAAGAGGGAGCGAGCACTCATGAGTTCAGCTCCAGTTTCTAGGGCTCCAGAATCATTTCTGAATCCATCCGTCCAATCTTCAACCGTTGGAAGTCTTTCGGATTCTGATCTTCCACGTGATATCTTGTCATTGTTGAGAAGTAGAGCTAAGAACTATCTGCAGCAAGGCCTCATGCCTAAAAGGATGTCTGTAAGTCTTGACTGCCATACAAAAGCCGTCAATGCAGTTCAATGGTCACCAAGTCATGCTCATCTCCTTGCTTCTGCTGCTATGGATTACACAATCTGTATATGGAACATATGGAGCACTGAGCAGAAGCTAGCATTCAAGTCGAGCATCCACGACGCTGCAGTTAAAGATGTTGAATGGTCACAACAAGGATTATCTATTCTTTCTTGTGGATATGATTGTTCTTCAAGATTGATTGATGTTGAGGAGGGAACAGAAGTTGGAGTATTCAAGGAGGATCAAGGCGTTGCAGTTGTAAAGTTCCACCCTAACAACCCAAGTCTCTTCCTTTCCGGTGGACTGAAAGGCAGCCTACGAATGTGGGATGTGAGAATCGGAAAAGTGGTCAACAAATACAATCGACGGCTTGGCCCAATTCTTGATGTTGAATTTACTCCTAATGGCAATCAATTCATTTCTTCTAGCGATGTTTCTTCAAGCAATAGCAGTGAAAGTTCTGTCATCGTTTGGGACGTCACAAGAGAAGTTCCGCTTTCATATCAGGCATGTTATTTTCCACCCTCCTTTTCATCACTACAATTATCATTTGTTTATATGGAAGCCTACACTTGTCCATGCGTGAGATGCCACCCATTTGATCCAGTTTTTATTGCCCAATCGAACGGAGATTATATTGCAATCTTCTCTCTAAACCCACCTTTCAAGTTAGACAAATACAAGAGGTATGGAAGTCATGTAGTTTCAGGCTTTCCAATAAAATGTAACTTCAGCTTGGATGGCAAGCAAATCATCTCTGGTTCTTCAGATGGCTCTATATATTTTTACGATTATAAATCATCCTTACTTATACACAAACTAAAAGCATCTGAACAGGCTTGCACAGACGTTGCCATCCACCCAACCTTACCTAATGGAGACAAGACACTCACTTTTAGATTCATTTCTCCAAATGGGACCAAACATCCCCACCTTTCTGCACCAAATACACAGGGACCCCCTAAATTTAGGGCACTCGACCGACAAAGTGTGTCTGAAACAGTGGAAAGGACAGAGTGTTGTTTA 1581 43.71 CFEPKIEVHWPSEVFDPILPAAEADYEGETHFQCSSHNFGAMEHLFEAYSNTSDEDNQEDEPQPKRLALPSSTSKRPEHSQFQPMFRPSNCPDSTSEPQKEIMVPGRYISKRERALMSSAPVSRAPESFLNPSVQSSTVGSLSDSDLPRDILSLLRSRAKNYLQQGLMPKRMSVSLDCHTKAVNAVQWSPSHAHLLASAAMDYTICIWNIWSTEQKLAFKSSIHDAAVKDVEWSQQGLSILSCGYDCSSRLIDVEEGTEVGVFKEDQGVAVVKFHPNNPSLFLSGGLKGSLRMWDVRIGKVVNKYNRRLGPILDVEFTPNGNQFISSSDVSSSNSSESSVIVWDVTREVPLSYQACYFPPSFSSLQLSFVYMEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYGSHVVSGFPIKCNFSLDGKQIISGSSDGSIYFYDYKSSLLIHKLKASEQACTDVAIHPTLPNGDKTLTFRFISPNGTKHPHLSAPNTQGPPKFRALDRQSVSETVERTECCL 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5005390 5009738 - Carg00045-RA Car04g00870 146295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00870 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 304 IPR001680 GO:0005515
Car04g00870 527 MobiDBLite consensus disorder prediction 51 101 - -
Car04g00870 527 ProSitePatterns Trp-Asp (WD) repeats signature. 196 210 IPR019775 -
Car04g00870 527 MobiDBLite consensus disorder prediction 67 97 - -
Car04g00870 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 176 210 IPR001680 GO:0005515
Car04g00870 527 MobiDBLite consensus disorder prediction 124 144 - -
Car04g00870 527 Pfam WD domain, G-beta repeat 269 295 IPR001680 GO:0005515
Car04g00870 527 Pfam WD domain, G-beta repeat 175 209 IPR001680 GO:0005515
Car04g00870 527 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 176 210 - -
Car04g00870 527 MobiDBLite consensus disorder prediction 120 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00870 K24742 WDR25; WD repeat-containing protein 25 - csv:101214186 694.501
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00870 Car-Chr4:5005390 Car18g00732 Car-Chr18:8442110 5.82E-43 dispersed
Car04g00870 Car-Chr4:5005390 Car04g01761 Car-Chr4:10095113 3.16E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g385 . . . . . . Bma10g00525 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1113 Cone15ag1127 . . . . Blo07g00929 . Bda05g00747 . . Bpe03g00812 . . . . . . . Car04g00870 . . Cpe01g00843 . . . . . . . . . . . . . . . . Chy06g01770 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008063 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 2 2 2 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00870 Car_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0