Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00873 ATGGATCTGTTGAAGGCTGAAACTGAGTTAAAACAATTGAGTATGGACATTGATCCTCCATTACAAGTTTGCTACAATGCCCTGATGAAAGGTGAAGTGGAGGGTAAAAGTGGAAGAGTGGAGGATGAGGTGGAGGAGACATATGAAGATCTACCAGTGATTGATTTAGGGCTTCTAAAGATGGGGAATTTAGAGAGGGAGAAGTGCAAAAAGGAGATAGTTGAGGCAGCAAGGAATTGGGGTTTCTTTCAAGTAATGAATCATGGGGTTCCTGAGAGGGCATTGAAGGCGTTGTTGTATGAGCAAAAGAAAGTGTTCTATCACCCTTTTGCACACAAGAGTTTGGGAAACTTTCTAAATTTGGGTGGAACTTACCGGTGGGGTAACCCTCTTGCCCTTTCTCCTTCTCAAATTTCTTGGTCTGAAGCTTTTCATATAGCTGTTTTGGATGTTTCAAGCTTGGAGGAGCATGTCACCTTCAGATCCACAATGGAAACAGTTGCGAAGAAATTTGGGAGCTTAGCAGAGAGCATAGCAGAGATTTTAGGGCAAAGTTTGGGGATAAAATGGAGTTACTTCAAAGAAAGATGTGAGAAAGGAAAGAGCAGCCTTAGACTGAACAGATACCCACCTTGTCCATTTGCCTCCAAAGTGTATGGCCTTATTCCTCACACAGACAGCGATTATCTGACAATACTTTATCAAGCTCATACCAGTGGTCTGCAGCTCATGAGAGATGGAACCTGGTTTCCTGTTAAACCTAACCCACAATATTTGCTTGTCAACATCGGTGACTTACTTCAGGTTGTGAGCAATGATGTTTTCAAGAGCATAAAACACAGAGTGGTTGCTTCTGAAGAAGATGAGAGATTTTCGTTTGCATATTTCTACTGCCCATCGGAAGATGTGATGATTGAGAGCTGCATGAAACCAAGCATTTACAAGCAGTTCAGCTACAAAGAGTATAGACAACAAATAGAAAAAGATGTGGAGAAAACAGGCAACAAAGTAGGGCTTTCAAGGTTTTTCTTGCACCACATGTTGGATTCAATGAGTAAGAATCCAGAAAACCTACAGAAGGCCATTGCTGGTTGTTCTGTAAAGGACCCGGCTGCCTTTGGTGGCTGTCATACGCAGAGACAAGCAAGTTAG 1152 42.36 MDLLKAETELKQLSMDIDPPLQVCYNALMKGEVEGKSGRVEDEVEETYEDLPVIDLGLLKMGNLEREKCKKEIVEAARNWGFFQVMNHGVPERALKALLYEQKKVFYHPFAHKSLGNFLNLGGTYRWGNPLALSPSQISWSEAFHIAVLDVSSLEEHVTFRSTMETVAKKFGSLAESIAEILGQSLGIKWSYFKERCEKGKSSLRLNRYPPCPFASKVYGLIPHTDSDYLTILYQAHTSGLQLMRDGTWFPVKPNPQYLLVNIGDLLQVVSNDVFKSIKHRVVASEEDERFSFAYFYCPSEDVMIESCMKPSIYKQFSYKEYRQQIEKDVEKTGNKVGLSRFFLHHMLDSMSKNPENLQKAIAGCSVKDPAAFGGCHTQRQAS 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5025495 5028866 + Carg00048-RA Car04g00873 146298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00873 383 Pfam non-haem dioxygenase in morphine synthesis N-terminal 51 148 IPR026992 -
Car04g00873 383 Pfam 2OG-Fe(II) oxygenase superfamily 204 299 IPR044861 -
Car04g00873 383 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 200 299 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00873 - - K04125 mcha:111025151 512.301
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00873 Car-Chr4:5025495 Car13g00579 Car-Chr13:7640128 2.05E-104 dispersed
Car04g00924 Car-Chr4:5289747 Car04g00873 Car-Chr4:5025495 1.01E-99 transposed
Car16g00863 Car-Chr16:6355420 Car04g00873 Car-Chr4:5025495 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g343 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1114 . . . . . . . . . . . . . . . . . Car04g00873 . . . . . . . . . . . . . . . . . Lsi05g00675 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010893 2 1 0 2 0 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 2 1 1 1 1 0 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00873 Car_Chr04 FPKM 45.485943 47.038399 63.617565 72.598343 58.573292 44.016674 63.45689 45.287899 52.284271 62.716854