Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00876 ATGGTATCCCCTGAAACCACCAATTGGCTCTTTGATTATGCGTTAATCGATGATATTCCTGTTCCTGATGATGTCAATTTCTCTGCACCTACTGCCGGTTTCTCTTGGTCCATGCAACCCTTCAACGCCTCCTCTGATGTCAGTGCGGAAATTGAAGGATCATTGTTGGAATCAGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGGTCAGAACTGAATCAAGTTGTGCATCTAGCTCAAAAGCATGTAGGGAGAAGCTGCGGAGGGACAGATTAAATGACAAATTTTTGGAATTGAGTGCTACTCTGGAGCCTGGAAGGGCACTGAAGACCGACAAGGCTGCCATTTTGATTGATGCTGTTCGAATGGTCACTCAGTTACGCGGTGAAGCCCAGATGTTGAAGGACTCAAATACAAGCCTATTAGAGAAGATTAAAGATTTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGCATAGGCTAAAACTGGAGAAGGAGAAGTTGGAGCAGCAACTAAAAGCCACGAATTCACAACCTGGCTTCATGCCTCCAGCCATCCCTGCAACTTTTGCAGCACAAGGCCAAGCACCTGGAAACAAGTTGGTTCCCTTCATTGGCTACCCAGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCTGTTGACACCTCGCAAGATCACTTCCCTCCTGTTTTCTCTCATCAGATGGCCACCGATCTTCTCAAATTTCCTTTCCAAATCCCCGAAGCTGCTATTTCTTCCCCATTCCCCAATCTACTCCCCACCAAAAATTTCTCCCCTCTTCTAACGTTTCCGGCTTCTCAGGTTTTCCCAATTCACCATTTCCAGGTCTCCTTCTATCCTCATGCAACTCACAAATTAAAAAGAACCCTTGCTACTACGCTTCATTCCTCTCTGTCTTCTTCAACCCCACCCACCTCAAAAGAAGAAGCCGTTTCTCAGGCCAAAACCTGCCTCTGTACCACACTCCAAAAGCCCCTCAACAACATTAGATTTCCCGGCAGGATCGTCAAGAAAGCAAAGCAACCCAGATTCCGCGTCGAGATTCCGGTCATTGATGAATCGCCCAGGTCTCTGACTGACCTCGCTTTTGAGATGTTTGGGGACCTACCCATTAAGATAAAAGGTTCCCCTGTTAAAATTTTACTCCTCTGGCCAAGCCCCATCTTGGCTGATGCTGCCAGTAAAGCCTTTCTTTCTTGTTCTTCAGACCAAATTGAACAAATAGACATTTCCTCAATGGATGGTTTAGATGCCAGAGTTTCGAATTCTAGTGTTGTGGCAGTGTTTCTGGGGCCAGAATCTTCTCAAATTCGAACTATAAAGAGTATTACTGATCTTTTGTATCCCAATCCAGTGGTGATTTTCAACCCCAAATGGGCATTTGAGGAGGAGAGTGAATTTGGTGACTTGAGTGGATTTGTTGGGTCTTTTGATGTCATTTATTCCTTCATGGGGTTGGAAGTTCAAGGGATTTTGAACAAGAGAAAAGGGGTGATTTTCAAGTGTGTGAGAAATGGGGTTTTGAGTGGTGAGCTATGGAATGTGCTTGTTGAAGAGGAAGGAGGAGAACTGAAGGCGGTTTCGAAGTTCAAGGCGAGGCCATCGATCACAGAAGTCGAGAATGTGTTGTACAATTTGATGGCCATGAATTCACCCATCACCAAGTCTGCAAAGTTCTTGAAGGACTTGGTGTCAAATGTAACTGGGAAA 1737 45.65 MVSPETTNWLFDYALIDDIPVPDDVNFSAPTAGFSWSMQPFNASSDVSAEIEGSLLESDGLKEPGSKKRVRTESSCASSSKACREKLRRDRLNDKFLELSATLEPGRALKTDKAAILIDAVRMVTQLRGEAQMLKDSNTSLLEKIKDLKAEKNELRDEKHRLKLEKEKLEQQLKATNSQPGFMPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHFPPVFSHQMATDLLKFPFQIPEAAISSPFPNLLPTKNFSPLLTFPASQVFPIHHFQVSFYPHATHKLKRTLATTLHSSLSSSTPPTSKEEAVSQAKTCLCTTLQKPLNNIRFPGRIVKKAKQPRFRVEIPVIDESPRSLTDLAFEMFGDLPIKIKGSPVKILLLWPSPILADAASKAFLSCSSDQIEQIDISSMDGLDARVSNSSVVAVFLGPESSQIRTIKSITDLLYPNPVVIFNPKWAFEEESEFGDLSGFVGSFDVIYSFMGLEVQGILNKRKGVIFKCVRNGVLSGELWNVLVEEEGGELKAVSKFKARPSITEVENVLYNLMAMNSPITKSAKFLKDLVSNVTGK 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5055759 5060624 - Carg00051-RA Car04g00876 146301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00876 579 Pfam Domain of unknown function (DUF1995) 313 549 IPR018962 -
Car04g00876 579 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983
Car04g00876 579 Coils Coil 131 179 - -
Car04g00876 579 Pfam Helix-loop-helix DNA-binding domain 80 127 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00876 Car-Chr4:5055759 Car20g00518 Car-Chr20:2857941 8.59E-82 dispersed
Car16g00858 Car-Chr16:6308245 Car04g00876 Car-Chr4:5055759 1.35E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3314 PF09353 DUF1995 8.90E-34 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00876 - - bhj:120091076 521.546