Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00891 ATGAATTGCTTTCAATGTTGCTTGACAGACAAGAAAGTCGATAGAAAATCTCTGAAAAAGAGCATTAAGGAGTATCAGGACACAAAAGCTCTAACCTCTTTTGCCAACATTTCCTTTAAATCTGATAGCAGTCGACGAAGGTACATAACTGAGGAGATAAAGAAGTTAGGAAAAGGAAACATCACAGCTCAAACTTTTACATTTGGTGATCTAACCACTGCTACTAATAACTTCGACCATGAAAATCTATTGGGGGAAGGTGGTTTTGGAAGGGTGTACAAAGGCATCCTTGAAAGCACAAAACAAGTAACAGCTGTGAAGCAACTCGACCGAAATGGATTTCAAGGAAACAGAGAATTCCTTGTAGAGGTTTTGATGTTGAGCCTTCTTCACCATCCCAATCTTGTGAATTTGATTGGGTATTGTGCTGATGGGGATCAGAGGATCTTGGTTTACGAGTACATGGCTCACGGCTCCTTGGAAGATCATCTTCTTGATCTAGCGCCGGATAAGACGCCTCTGGACTGGAAGACGAGGATGAAAATTGCTGAAGGAGCAGCGAAAGGACTTGAATACTTACACGAAACTGCGAATCCTCCTGTGATATATCGCGATTTCAAAGCTTCGAACATATTGTTGGATGATGAATTCAATCCAAAGCTTTCTGATTTTGGTCTTGCAAAGTTAGGTCCTACTGGGGATAAATCTCATGTTTCCACTAGAGTGATGGGAACCTATGGTTATTGTGCTCCTGAATACGCACTCACAGGACAGTTAACAACGAAATCAGATGTTTACAGTTTTGGTGTCGTGTTTCTGGAAATAATAACTGGAAGACGAGTTATAGACAACGCCCGACCAACAGCAGAGCAAAACTTAATCACTTGGGCACAGCCTCTTTTCAAGGACAGAAGGAAATTTACACTCATGGCAGATCCAAAGCTAGAAGGAAACTATCCAGTGAAGGCTCTGTATCAAGCTCTGGCAGTGGCAGCCATGTGTTTACAAGAGGAAGCGGGTACACGGCCATTGATCAGTGATGTGGTTACAGCTATCGAATTTTTAGCTGCAAATAAGGATACCGATGCAGACGTAGATGACGAAGAGCCAGGTTTGATATCAGGAGCAGCTTTGGGTTCAGATTCTCCTGATAGAAGTAGTAGTAATGGTGATAAAAATGTTGATGTTGAGGGTGAGTGA 1200 42.17 MNCFQCCLTDKKVDRKSLKKSIKEYQDTKALTSFANISFKSDSSRRRYITEEIKKLGKGNITAQTFTFGDLTTATNNFDHENLLGEGGFGRVYKGILESTKQVTAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRILVYEYMAHGSLEDHLLDLAPDKTPLDWKTRMKIAEGAAKGLEYLHETANPPVIYRDFKASNILLDDEFNPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDNARPTAEQNLITWAQPLFKDRRKFTLMADPKLEGNYPVKALYQALAVAAMCLQEEAGTRPLISDVVTAIEFLAANKDTDADVDDEEPGLISGAALGSDSPDRSSSNGDKNVDVEGE 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5114027 5116268 + Carg00066-RA Car04g00891 146316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00891 399 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Car04g00891 399 MobiDBLite consensus disorder prediction 360 399 - -
Car04g00891 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Car04g00891 399 Pfam Protein kinase domain 80 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00891 399 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00891 Car-Chr4:5114027 Car06g01271 Car-Chr6:9107178 9.43E-179 dispersed
Car08g00059 Car-Chr8:350957 Car04g00891 Car-Chr4:5114027 3.92E-153 dispersed
Car16g00846 Car-Chr16:6187289 Car04g00891 Car-Chr4:5114027 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88790 PF00069 Pkinase 7.40E-47 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00891 - - csv:101212756 718.383