Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00912 ATGAGGATGAAGACACTTGAGGATGATATTAATGCGGCTTGCAAGGCTGAAGATTCTGATTTTGAGCCTGTTCTCAAGCCATATCAGCTGGTTGGCGTGAACTTTCTTCTTCTTTTGTATCGTAAGGGAGTTGGTGGAGCTATACTTGCGGATGAGATGGGTTTGGGGAAGACAATTCAGGCTATTACATATCTTGTAATGTTGAAATATTTGAGCAATGATTCGGGGCCTCATCTAATTGTATGCCCTGCATCTGTTCTGGAGAACTGGGAAAGAGAACTCAAAAAGTGGTGCCCATCCTTTTCTGTACTCCAGTATCATGGGGCTGCCCGGTCGACATATGCAAAGAAATTGAGTTCTCTGGCCAAGTCGGGGTTGCCTCCTCCATTTAATGTTCTTCTTGTTTGTTATTCTCTTTTTGAAAGGCACAGTTCCCAGCAGAAAGATGAACGTAAAATTCTGAAACACTGGCAATGGAGCTGCGTTCTTATGGATGAGGCTCATGCCTTGAAAGATAGAAACAGTTATCGGTGGAAAAATTTAATGTCTCTTGCACGTAATGCAAAGCAACGGTTAATGTTGACAGGGACACCGCTTCAGAATGATTTACATGAGCTGTGGTCACTGTTGGAGTTTATGATGCCCAATCTCTTTGCTGCTGGGGATGTGGACTTGAAAAAACTGTTAACAGCTGAGAACAATTCTTTGGTTAACCATATGAAATTCATTTTGGGTCCGTTTATTTTGAGGCGGTTAAAATCTGATGTTATGCAACAACTTGTTCCAAAGATACAGCAGATTCAATTTGTTGCAATGGAAAAGCAACAAGAAGATGCCTATAAGGATGCCATTGAAGCTTATCGAAATGCTTCACGTGCTCGTATTGATAGAAAAGCCAATACTAATTCAGATAACATATATGGTGTTCTTCCCCGTCGTCAGATATCTAATTATTTTGTTCAGTTCCGCAAGATTGCTAATCATCCTTTACTGGTGCGGCACATTTACAATGATGAGGATGTTGTTCGTTTTGCTAAAAAGTTACATCCTTTGGGTGCATTTGGCTTTGAATGTTCCGTGGAAAGGGTAGTTGAGGAACTTAAAAGTTACAATGATTTTTCCATTCACCGGTTATTACTTTCATATGGCATCACTGACAGAAAGGGAGTTCTATCAGACAACAAAGTGCTACTTTCAGCTAAGTGTCGGGAATTAGCGCAACTACTTCCTTCACTGAAGCAAGGTGGACATCGAGTTCTTATTTTCAGTCAATGGACATCAATGCTCGACATCCTGGAATGGACACTGGATGTGATTGGGTTAACTTATAGACGACTTGATGGAAGCACGCAGGTAGCAGAACGACAGACAATAGTTGACACTTTCAATAACGACACTTCGATATTTGCATGTTTGCTTTCTACTAGAGCGGGGGGACAGGGCTTGAACTTAACTGGAGCCGATACCGTTGTCATTCACGACATGGATTTCAATCCACAGATTGACCGTCAAGCAGAAGATCGTTGTCATCGAATTGGCCAAACCAAACCTGTCACCATATACAGGTTGGTCACCAAGGGGACAGTGGATGAAAATGTCTATGAGATAGCAAAAAGGAAGTTAGTCCTTGATGCTGCAGTTCTGGAATCAGGTATCGAGATGGATAACGAGCGCGAGTCATCTGAGAAGACCATGGGGGAGATATTATCAGCAATTCTTCTTGGTTAG 1728 41.96 MRMKTLEDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGGAILADEMGLGKTIQAITYLVMLKYLSNDSGPHLIVCPASVLENWERELKKWCPSFSVLQYHGAARSTYAKKLSSLAKSGLPPPFNVLLVCYSLFERHSSQQKDERKILKHWQWSCVLMDEAHALKDRNSYRWKNLMSLARNAKQRLMLTGTPLQNDLHELWSLLEFMMPNLFAAGDVDLKKLLTAENNSLVNHMKFILGPFILRRLKSDVMQQLVPKIQQIQFVAMEKQQEDAYKDAIEAYRNASRARIDRKANTNSDNIYGVLPRRQISNYFVQFRKIANHPLLVRHIYNDEDVVRFAKKLHPLGAFGFECSVERVVEELKSYNDFSIHRLLLSYGITDRKGVLSDNKVLLSAKCRELAQLLPSLKQGGHRVLIFSQWTSMLDILEWTLDVIGLTYRRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEILSAILLG 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5193744 5210964 + Carg00087-RA Car04g00912 146337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00912 575 Pfam Helicase conserved C-terminal domain 401 513 IPR001650 -
Car04g00912 575 Pfam SNF2-related domain 44 331 IPR000330 GO:0005524|GO:0140658
Car04g00912 575 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 404 566 IPR001650 -
Car04g00912 575 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 38 216 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00912 K14439 SMARCAD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-] - csv:116403816 1082.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00425 Car-Chr3:4827355 Car04g00912 Car-Chr4:5193744 6.43E-11 dispersed
Car04g00912 Car-Chr4:5193744 Car08g01037 Car-Chr8:7091424 2.57E-88 dispersed
Car10g00202 Car-Chr10:977968 Car04g00912 Car-Chr4:5193744 1.03E-35 dispersed
Car20g00540 Car-Chr20:2975692 Car04g00912 Car-Chr4:5193744 5.55E-31 dispersed
Car04g00912 Car-Chr4:5193744 Car17g00229 Car-Chr17:1408978 6.56E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1106 . . . . . . . . . . . . Car04g00912 . . . . . . . . . . . . . . . . . . Cone13ag0678 Cone19ag0668 . . . . . . . . . . Bpe11g01720 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010131 0 0 1 0 1 1 2 1 2 2 1 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 0 3 2 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3316 PF00176 SNF2_N 3.20E-54 CL0023 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00912 Car_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0