Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00916 ATGTCGCGGAAGGGTTTGATGGAACAAGACTTAAAGAAATTGGATGTGACAAAGCTCCATCCACTTTCTCCTGAAGTTATATCTCGTCAGGCTACAATTAATATTGGTACTATTGGTCACGTGGCACATGGGAAGTCCACCGTTGTAAAAGCAATTTCAGGAGTCCAGACTGTACGTTTTAAGAATGAGCTGGAGCGTAACATTACCATTAAGCTGGGGTATGCCAATGCAAAGATATACAAATGTGAAGATGACAAGTGCCCTCGGCCCATGAGCTACAAGGCATATGGAAGTGGAAAGGAAGACAGTCCTTTATGTGATGTGCCTGGATTTGAAAATTGCAGAATGAAACTATTGCGACATGTATCCTTTGTCGACTGCCCTGGTCATGATATTCTTATGGCTACCATGCTTAACGGAGCAGCTATTATGGATGGAGCATTACTTCTGATCGCTGCCAATGAAAGCTGCCCTCAACCTCAAACTTCTGAGCACCTTGCTGCTGTTGAAATTATGCGCCTTCAACATATTATAATCCTCCAGAATAAAGTTGATCTTATTCAGGAAAATGTGGCAATCAATCAACATGAAGCTATTCAAAAATTTATTCAGGGAACTGTTGCTGATGGTGCACCAGTAGTACCAATTTCTGCTCAGCTCAAGTATAATATTGATGTTGTTTGCGAGTATATAGTGAAAAAAATTCCAATTCCAGAAAGGAACTTCGTCTCACCTCCTAATATGATTGTGATTCGTTCTTTTGATGTCAACAAACCCGGATTTGAAGTTGATGAGATCAAAGGTGGTGTGGCTGGTGGTAGCATATTACGGGGTGTTTTAAAGGTGAATCAATTTATTGAAGTTCGTCCGGGGATTGTTGTTAAGGATGAAAGTGGTAACATCAAGTGCACTCCAATATACTCAAGGATTGTTTCATTGTATGCGGAGCAAAATGAGCTGCAATTTGCAGTCCCTGGAGGTCTCATTGGGGTTGGCACAACTATGGATCCCACTTTGACTCGTGCTGACAGATTGGTCGGTCAGGTTCTTGGGGAAGTTGGTTCACTTCCTGATGTTTTTGTTGAGCTAGAGGTAAACTTTTTCCTTTTGCGGCGGCTCCTGGGTGTCAGGACAAAAGGATCAGAAAGGCAGGGAAAAGTATCAAAGCTAGCCAAGGGGGAGATTCTAATGTTGAACATAGGATCCATGTCTACGGGAGCTAGAGTACTTGCAGTAAAGAACGATTTAGCAAAACTGCAGCTTACTTCTCCTGTTTGCACCAGCAAGGGGGAGAAGATTGCTCTAAGTCGTCGGGTCGAGAAGCACTGGCGTCTTATTGGCTGGGGTCAAATTCAAGCTGGAAGTACTCTCGACGTCCCTCCCTGCCCCATTTGA 1395 43.37 MSRKGLMEQDLKKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDKCPRPMSYKAYGSGKEDSPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPDVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGSTLDVPPCPI 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5236248 5240910 - Carg00091-RA Car04g00916 146341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00916 464 Pfam Elongation factor Tu GTP binding domain 32 236 IPR000795 GO:0003924|GO:0005525
Car04g00916 464 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 30 239 IPR000795 GO:0003924|GO:0005525
Car04g00916 464 CDD eIF2_gamma_II 241 354 IPR044127 GO:0000049
Car04g00916 464 Gene3D - 30 240 IPR027417 -
Car04g00916 464 Gene3D Translation factors 242 356 - -
Car04g00916 464 Gene3D Translation factors 357 456 - -
Car04g00916 464 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 1 463 - -
Car04g00916 464 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 355 452 IPR009001 -
Car04g00916 464 Pfam Initiation factor eIF2 gamma, C terminal 362 451 IPR015256 -
Car04g00916 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 242 IPR027417 -
Car04g00916 464 PRINTS GTP-binding elongation factor signature 34 47 IPR000795 GO:0003924|GO:0005525
Car04g00916 464 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
Car04g00916 464 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
Car04g00916 464 PRINTS GTP-binding elongation factor signature 177 186 IPR000795 GO:0003924|GO:0005525
Car04g00916 464 CDD eIF2_gamma 33 240 IPR044128 GO:0005525
Car04g00916 464 Pfam Elongation factor Tu domain 2 268 350 IPR004161 GO:0005525
Car04g00916 464 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 463 - -
Car04g00916 464 CDD eIF2_gamma_III 357 451 IPR015256 -
Car04g00916 464 SUPERFAMILY Translation proteins 240 354 IPR009000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00018 Car-Chr4:74480 Car04g00916 Car-Chr4:5236248 1.59E-07 dispersed
Car04g00019 Car-Chr4:76067 Car04g00916 Car-Chr4:5236248 2.61E-128 dispersed
Car04g00916 Car-Chr4:5236248 Car17g01090 Car-Chr17:8455055 5.75E-15 dispersed
Car04g00013 Car-Chr4:56734 Car04g00916 Car-Chr4:5236248 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00916 K03242 - csv:116403970 907.516