Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00918 ATGGAGATTAGCAGCGTCGGCATGGATAATTCGGCGGTGACGGCGTTTTTGTTGACCGACGCAACCACTTGGTGGCAAGAAATAAACGATTCTCCCCTTTGGCAGGATCGTATCTTCTTAATCCTTGCTGCTCTCTATGGCGTCGTCGCCATCGTCGCTCTTATTCAACTAGTCCGTATACAGTTGAGGGTGCCGGAGTATGGTTGGACCACGCAGAAGGTCTTCCATTTTCTCAATTTCTTGGTGAACGGAGTGCGAGCGGTCGTTTTTGTATTCCGTCGTGACGCTCAGAATTTGGAACCGCCGATTCTCCGACATATCTTGCTTGACATGCCAAGCCTTGCCTTCTTCACAACTTATGCTCTATTGGTTTTGTTTTGGGCAGAGATTTACTACCAGGCACGTGCTGTATCGACTGACGGGTTGAGACCAACTTTCTTTACAGTAAATGCAGTTGTCTATGTAATTCAGATTGTTTTGTGGCTGATATTGTGGTGGAATCCTGTTCATGTACTGGCCATCCTTTCTAAGATGTTCTTTGCCAGTGTCTCTTTGTTCGCTGCCCTTGGCTTTCTTATTTATGGGGGAAGATTGTTCTTGATGTTACAGCGCTTCCCTGTGGAATCCAAAGGAAGACGGAAGAAGTTGCAAGAGGTCGGCTATGTGACGACTATATGTTTTTCATGTTTCCTAATCAGATGCATCATGGTGAGTCTACTTCTGTCCAATATGTGTTTTAATGCTTTTGATCAAGCTGCTGACCTCGACGTTTTGGATCATCCGGTTCTAAATTTTATATACTACATGTTGGTTGAGATTTTACCTTCTTCTCTGGTCCTCTTCATTCTGAGAAAGCTGCCCCCGAAACGAGGAATCACGCAGTACCATCCTATCCGTTAA 900 45.22 MEISSVGMDNSAVTAFLLTDATTWWQEINDSPLWQDRIFLILAALYGVVAIVALIQLVRIQLRVPEYGWTTQKVFHFLNFLVNGVRAVVFVFRRDAQNLEPPILRHILLDMPSLAFFTTYALLVLFWAEIYYQARAVSTDGLRPTFFTVNAVVYVIQIVLWLILWWNPVHVLAILSKMFFASVSLFAALGFLIYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFSCFLIRCIMVSLLLSNMCFNAFDQAADLDVLDHPVLNFIYYMLVEILPSSLVLFILRKLPPKRGITQYHPIR 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5246731 5256203 - Carg00093-RA Car04g00918 146343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00918 299 Pfam THH1/TOM1/TOM3 domain 21 299 IPR009457 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00918 - - - csv:101221380 535.798
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00006 Car-Chr4:19855 Car04g00918 Car-Chr4:5246731 0 dispersed
Car04g00918 Car-Chr4:5246731 Car13g00591 Car-Chr13:7700868 2.05E-116 dispersed
Car04g00918 Car-Chr4:5246731 Car18g00286 Car-Chr18:1691706 3.61E-119 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1077 . . Bda01g02198 . . . Bma14g01624 . Cmo04g01053 . . . Car04g00918 . . . . Bhi07g00090 . . . . . . . . . . . . . Cone13ag0666 . . . . . . Cme10g01366 . . . . Bpe11g01617 . Bma01g00029 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00964 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007319 0 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 3 1 1 1 1 0 0 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00918 Car_Chr04 FPKM 3.984466 4.748821 71.924889 71.389648 939.806702 847.635376 886.561157 20.573597 19.912775 18.369749