Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00924 ATGACGGACTCCAACCCACCACTCTTCCATCAATATGAGTTGCTTTTGCAATCCAAAGCTCAATTACAACTACTTAACAATGGCAATCAACAAATTAACTCTGTCATGGAGGAATGTCAGCTTCCTCTTATTGATCTTACAGGTTTGGAAAGTAGCAATGAAAAGGAGAGGAGGGCTTGCAGTAGAGAAATTTTTGGAGCGTCGGCAGAATGGGGATTCTTCCAAGTGATAAACCATGGGATACGCACAGAGCTGCTGAGCAGAATGAGCAAAGAACAAACGAAGTTATTTGGGGTACCCTTTGAGAAAAAATCTACAAGTGGGATTTTGGATCATTCTTACAGATGGGGAACACCGACTGCAACCCACCCAAACCAGTTCTCTTGGTCTGAAGCTTTTCACATTTCCCTCACAAAGGTCTCTGAAGCTGCCTGCTATGGCGAGTTCATTAACTTAAGGGAAGTGATGGAGGAACTGGCAACCGCCATGTCGAAGTTAGCAAGATCTTTAGCAGGAGTTTTAGTGGAGTGTTTGGGCCACCGAAAAGAAATATTTGACGATATCTGCGACGAAAGCACATGCTTCCTCCGATTGAATCATTACCCAATCTGTCCATTTCCCGGCGATGTTTCCGGCCTGGTGCCCCACACGGACAGCGATTTTCTTACCATACTTCATCAAGATCGCAGCGGCGGGCTGCAGCTGATGAAAGGATCGCAATGGGTGGCTGTAAAACCCAATCCAGAAGCCCTTGTTGTCAACATTGGAGATCTTCTACAGGCTTGGAGCAATGATACTTACAAGAGTGTGAAGCACAGGGTCGTGGCTAATTCAATGCGGGAAAGATATTCGATAGCCTACTTCCTCTGCCCTTCTTATCATTCTCCAATTGGGAGTTGCAGACAGCCTTCACCGTATAGACACTTCACTTTTGCTGAGTACAGAAAGCAAGTTAGAGATGATGTGGAAAAAATTGGGTACAAAGTAGGTCTTTCGAAATTTCGG 1005 45.17 MTDSNPPLFHQYELLLQSKAQLQLLNNGNQQINSVMEECQLPLIDLTGLESSNEKERRACSREIFGASAEWGFFQVINHGIRTELLSRMSKEQTKLFGVPFEKKSTSGILDHSYRWGTPTATHPNQFSWSEAFHISLTKVSEAACYGEFINLREVMEELATAMSKLARSLAGVLVECLGHRKEIFDDICDESTCFLRLNHYPICPFPGDVSGLVPHTDSDFLTILHQDRSGGLQLMKGSQWVAVKPNPEALVVNIGDLLQAWSNDTYKSVKHRVVANSMRERYSIAYFLCPSYHSPIGSCRQPSPYRHFTFAEYRKQVRDDVEKIGYKVGLSKFR 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5289747 5291814 + Carg00099-RA Car04g00924 146349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00924 335 Pfam 2OG-Fe(II) oxygenase superfamily 195 291 IPR044861 -
Car04g00924 335 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 190 291 IPR005123 -
Car04g00924 335 Pfam non-haem dioxygenase in morphine synthesis N-terminal 41 138 IPR026992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00924 - - - cmax:111486865 665.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00040 Car-Chr4:221269 Car04g00924 Car-Chr4:5289747 0 dispersed
Car04g00924 Car-Chr4:5289747 Car13g00579 Car-Chr13:7640128 4.31E-115 dispersed
Car04g00924 Car-Chr4:5289747 Car04g00873 Car-Chr4:5025495 1.01E-99 transposed
Car04g00924 Car-Chr4:5289747 Car16g00863 Car-Chr16:6355420 4.10E-100 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1070 . . . . . . . . Cmo04g01062 . Cma04g00986 . Car04g00924 . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g01001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01194 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012990 0 1 0 0 0 1 2 1 1 0 1 1 1 1 1 2 1 2 2 1 1 1 1 0 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00924 Car_Chr04 FPKM 29.59169 29.959686 28.377247 29.134407 32.694302 27.720926 36.609436 34.521179 33.962788 41.056202