Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00926 ATGAACGTTGAAGCAAAGAAGAAGTATGAGTTCTTAGAATCTATAAGTGCACTGATGGATGCTCATTTGAGATATTTTAAGCTAGGCCATGACTTATTGGGCCAGATGGAACCTTTCATTCATCAGGTTCTAACATATACACAACAATCTAAAGAACTGGCCAACAATGAACAAGATAAACTTGCAAAAAGAATTCAGGAATTCAGGTCACAAGCAGAGCTGGACAATTTGCAAGATTCCAATAGCCTAGATCTTTCCGTGATTTCTGATAGCATTCTTGGTAGTGGTACTAGTTCCTACAGAAATGTTGAAACAGCTTCCATGTTCATTGTCAATGGGCAGGTTGAAACTATAAAACAAGGATATCTCTTGAAACGATCTTCAGGTTCGAGGGGAGAATGGAAAAGGATGTTTTTCGTACTTGATAGTCAAGGTTCTCTCTATTATTATAAGAACAAGGGAAACAAATATATGGGCCATCAATCTCTTAGTTTCAATCGTTCAAATGAACACCACAAAAGTGTTTTTGATAGATTCCGTTCAAGGCACAAGAGGGCATCATCATTCAATGAAGAAATTTTGCGTTGCTCTACAGTTAATCTGCATACGTCTACAATAAAGAAGGATGCAGAGGATACAGACCTACGACTTTGCTTCAGAATAATTTCTCCCTCCAAGACCTACACTTTGCAGGCCGAAAACGAGGCAGATAGGCTGGACTGGATCAATAAAATCACGGGGGCTATTGCATCTCTTTTCAATTCTTACTTTCTTCAACAGCCATTTCTGGAAGCAAAACATGATGAAAGTTACAACAACAATTTCGACGATTATAACGTACAGACACTACATCAAAACAGACTAGAAGATGGCAGTCAAGTAGGTTCTGTTTCTAAGATATTAAGAGAAATTCCTGGAAATGATCTATGTGCAGAATGCGGCACTCCAGAGCCTAAGTGGGCCTCTCTAAACCTTGGCATTTTGTTGTGCATAGAATGCTCTGGTGTTCATCGTAATCTTGGTGTCCATATTTCTAAGGTAAGATCGATAGTATTAGATGTCAAAGTCTGGGAGCCTTCAATACTGGACTTGTTTAGGAACTTGGGCAATGCTTATTGTAACTCTATTTGGGAAGGATTGTTTCTTGCAGATAGGGGAAGCGATAATATACAATGCGACGTAGCCACGCCAATTCCAAAACCAAGTCTCAAGGATCCCATACAGCATCGGGAGAAATATGTTCATGCTAAGTATGTAGAGAAACTGTTTGTGGTCAAGGATAGTAAAGCACCCGGCAACAATTCTTATGCAAAAAGTATCTGGGAAGCTGTCAAAACAAATGACTTGCGAGAAGCTTATCGCCTCATAGCAGTTTCAGCAGTATCGATTGTCAACTCAACTTTTGATGATGTGGTCAGTGTCAGTTCGAGCCCGAATTTGGATGAGGAGCCCTCGGGAAGTAATCAAGAATCTCATAATCCATCGTTGTGTGGGAGAGATTTGGATTCTAGCGAGTCAAAGAACAGTCTTCAAGGTTGCTCACTACTGCATCTCGCTTGTCAAAATGACAATCAAGTGATGCTTGAACTGTTATTGCAATTCGGTGCCAATATAAATGTATGCGACTCTAATGGAAGTACGCCTTTGCACCAATGCATCTCCCAGAAAAACAATACCTTGGCTAAGTTTCTACTTAGAAGAGGTGCACGACCATCCATCAAAGACGGTGGAGGATTAAGTGCGTTAGAAAGAGCAATGGAAATGGGAGCAATAGCCGATGAGGAGCTATTTCTTCTGCTTACAAGATCTGAATAA 1815 40.28 MNVEAKKKYEFLESISALMDAHLRYFKLGHDLLGQMEPFIHQVLTYTQQSKELANNEQDKLAKRIQEFRSQAELDNLQDSNSLDLSVISDSILGSGTSSYRNVETASMFIVNGQVETIKQGYLLKRSSGSRGEWKRMFFVLDSQGSLYYYKNKGNKYMGHQSLSFNRSNEHHKSVFDRFRSRHKRASSFNEEILRCSTVNLHTSTIKKDAEDTDLRLCFRIISPSKTYTLQAENEADRLDWINKITGAIASLFNSYFLQQPFLEAKHDESYNNNFDDYNVQTLHQNRLEDGSQVGSVSKILREIPGNDLCAECGTPEPKWASLNLGILLCIECSGVHRNLGVHISKVRSIVLDVKVWEPSILDLFRNLGNAYCNSIWEGLFLADRGSDNIQCDVATPIPKPSLKDPIQHREKYVHAKYVEKLFVVKDSKAPGNNSYAKSIWEAVKTNDLREAYRLIAVSAVSIVNSTFDDVVSVSSSPNLDEEPSGSNQESHNPSLCGRDLDSSESKNSLQGCSLLHLACQNDNQVMLELLLQFGANINVCDSNGSTPLHQCISQKNNTLAKFLLRRGARPSIKDGGGLSALERAMEMGAIADEELFLLLTRSE 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5292417 5313684 + Carg00101-RA Car04g00926 146351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00926 604 Pfam Ankyrin repeats (3 copies) 502 575 IPR002110 GO:0005515
Car04g00926 604 ProSiteProfiles ARF GTPase-activating proteins domain profile. 295 431 IPR001164 GO:0005096
Car04g00926 604 Coils Coil 51 71 - -
Car04g00926 604 Pfam BAR domain of APPL family 2 56 - -
Car04g00926 604 ProSiteProfiles Ankyrin repeat region circular profile. 511 542 - -
Car04g00926 604 ProSiteProfiles Ankyrin repeat profile. 511 543 IPR002110 GO:0005515
Car04g00926 604 ProSiteProfiles Ankyrin repeat region circular profile. 544 575 - -
Car04g00926 604 Pfam Putative GTPase activating protein for Arf 298 425 IPR001164 GO:0005096
Car04g00926 604 ProSiteProfiles Ankyrin repeat profile. 544 576 IPR002110 GO:0005515
Car04g00926 604 Pfam PH domain 118 249 IPR001849 -
Car04g00926 604 MobiDBLite consensus disorder prediction 474 503 - -
Car04g00926 604 ProSiteProfiles PH domain profile. 116 250 IPR001849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00926 K12489 ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein - csv:101221303 984.556
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00926 Car-Chr4:5292417 Car06g01450 Car-Chr6:10320988 2.23E-166 dispersed
Car04g00926 Car-Chr4:5292417 Car04g00038 Car-Chr4:194421 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1058 . . . . . . . . Cmo04g01063 . . . Car04g00926 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01197 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003009 1 11 0 0 1 2 2 2 3 0 1 1 2 1 1 2 2 2 3 3 1 1 1 2 2 1 0 2 0 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00926 Car_Chr04 FPKM 10.329078 8.274603 11.394259 10.158603 10.581006 6.381228 9.294259 11.393751 11.792876 13.233426