Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00933 ATGTTGATATCGATATCTTCTCGTGTTCTTGTCTGTGTTCTTTTGTTCGTCGTAGGCTGCGTCGGTGCTGTAGAAATCGACGAGGAAAAGAAACATTTCATTGTTTTCCTGGAAATGAAGCCTGATTTGAATGAATTTGATGCAGTGGAAACACATCTTAATGTTCTCATGTCAGTGAAGGAAAGTAGCTATGTCGAGGCGGAGGAGTCGATGGTGTATAGTTACACAAAAAGCTTCAATGCCTTTGCAGCCAAGCTTACTGAAGATGAAGCCCTAGCATTGTCAAAGAGGGAAGACGTGCATCACGTGATTCCAAATCGATATAGAAAACTACAAACAACACGATCATGGGATTTCATCGGATTACCTTCCAAAGCCGGAAGAAATTCCAAAGAGACGGATATTATTGTGGGTTTATTTGATACCGGGATCACTCCAACGGCTGATAGCTTTAAAGATGATGGGTTTGGTCCTCCTCCCAAAAAATGGAAGGGCACGTGTCACCATTTCGCCAATTTCACCGGCTGCAACAGAAAACTCATCGGAGCAAGATATTTCAAGCTGGACGGCAACCCGGATCCGGCCGACATCTTGTCGCCGATAGACGTCGATGGCCACGGCACGCATACGTCATCAACGGCAACAGGTAATGCAGTTGCCGGAGCCAGCCTCTCTGGTCTGGCCAAAGGAACTGCCCGTGGAGGCGTGCCGTCCGCCAGAGTTGCCATGTACAAGGTCTGCTGGGCTAGCACTGGGTGCGCTGATATGGATATTCTAGCCGCCTTTGACGCTGCCATACATGATGGCGTCGATGTCATTTCAATATCAATCGGCGGCGGCGCCTTTGGCAATTACTCCGATGACTCCATCTCCATTGGGGCGTTTCATGCCTTGAAGAAGGGTATCATCACCGTGACCTCCGCCGGAAACGACGGCCCGACTCCCGGCAGTGTCGTTAACCACGCGCCGTGGATTGTGACGGTTGGTGCCAGCGCGATTGATCGGAAATTTATCAGTCTACTAGAGTTGGGCAATGGGAAGAACATCTCGGGAGTAGGGATAAACATATTCAATCCAAAGAAAAAAATGTACCCATTAGTGTACGGAGGGGATGTGGCGAGGGGCGCGGAGAACAGAGAGAGCGCAAGCCATTGCGCGGAGGACTCGCTTGATCCAAGCAAGGTGAAGGGCAGCCTTGTGTTCTGCGAATTGATCACTTGGGGTGTTGATTCTGTTGTCAATGCGCTTGGTGCCAACGGCGCTATCATTCAAAGCGATGAGTATCTTGACAATGCTAATATCTTCATGGCTCCTGCCACCATGGTTAGCAGCTCTGTTGGTGCTGTTATTCACTCCTATATCAAGTCCACCAGAACCCCCACGGCAGTAATATACAAAACAAGGCAGCTCAAAGCAGCAGCTCCTATGGCCGCTTCCTTCTCTTCTAGAGGCCCAAATCCAGGCACCACTCGCATTCTTAAGCCGGACATAGCAGCGCCGGGAGTGGACATATTGGCCGGTTACACGCCGCTGAAGTCACTGACAGGGCAGGAGGGTGACACCCAATTCTCCAAATTTACACTCATGTCTGGCACTTCCATGGCCTGCCCTCACGTCGCCGCCGCCGCCGCCTATGTCAAGTCTTTCCATCCTCTTTGGTCTCCTGGCGCCATTAGATCCGCCCTGATCACCACCGCGAGTCGGATCAGCCGACGGCTAAATCCTGATGGCGAATTTGCATATGGCGCTGGCAATCTAAATCCATCAAGAGCCATAAATCCTGGCCTAATCTATGATCTCAATGAAATGTCATACATCCAATTCCTTTGTAGCGAAGGCTACACCGGATCTTCAATAGGCGTCCTCGCCGGAACTAAACCCATAAACTGCTCTACTTTAATTCCGGGGCATGGACATGACTCTCTCAATTATCCAACCTTTCAACTCAGGCTCAAGAGCCCCCGACGAGCAATGTCCACCGTGTTCCGACGACGAGTCACCAACGTCGGTCACCCCGTATCTGTCTACAATGCCACCATCAAGGCTCCCCCTGGGGTGGAGATCACGGTTACACCGAGCACATTGTCATTTTCACGGCTGCAGCAGAAGCGGAGCTTTAAGGTGGCTGTGAAGGCCGGTCCTTTGGCGTCGGGGAAAATGGTGTCGGGTTCGGTTGCTTGGATCGGAGCTCGACATGCTGTGAGAAGTCCAATTGTTGTTTATAGCCCTGAGGATGAAGAAGTATTTGTGAGGGATTGA 2259 50.77 MLISISSRVLVCVLLFVVGCVGAVEIDEEKKHFIVFLEMKPDLNEFDAVETHLNVLMSVKESSYVEAEESMVYSYTKSFNAFAAKLTEDEALALSKREDVHHVIPNRYRKLQTTRSWDFIGLPSKAGRNSKETDIIVGLFDTGITPTADSFKDDGFGPPPKKWKGTCHHFANFTGCNRKLIGARYFKLDGNPDPADILSPIDVDGHGTHTSSTATGNAVAGASLSGLAKGTARGGVPSARVAMYKVCWASTGCADMDILAAFDAAIHDGVDVISISIGGGAFGNYSDDSISIGAFHALKKGIITVTSAGNDGPTPGSVVNHAPWIVTVGASAIDRKFISLLELGNGKNISGVGINIFNPKKKMYPLVYGGDVARGAENRESASHCAEDSLDPSKVKGSLVFCELITWGVDSVVNALGANGAIIQSDEYLDNANIFMAPATMVSSSVGAVIHSYIKSTRTPTAVIYKTRQLKAAAPMAASFSSRGPNPGTTRILKPDIAAPGVDILAGYTPLKSLTGQEGDTQFSKFTLMSGTSMACPHVAAAAAYVKSFHPLWSPGAIRSALITTASRISRRLNPDGEFAYGAGNLNPSRAINPGLIYDLNEMSYIQFLCSEGYTGSSIGVLAGTKPINCSTLIPGHGHDSLNYPTFQLRLKSPRRAMSTVFRRRVTNVGHPVSVYNATIKAPPGVEITVTPSTLSFSRLQQKRSFKVAVKAGPLASGKMVSGSVAWIGARHAVRSPIVVYSPEDEEVFVRD 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5351069 5355635 + Carg00108-RA Car04g00933 146358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00933 752 Pfam Subtilase family 134 584 IPR000209 GO:0006508|GO:0008236
Car04g00933 752 Pfam Fibronectin type-III domain 642 740 IPR041469 -
Car04g00933 752 Pfam Peptidase inhibitor I9 46 111 IPR010259 -
Car04g00933 752 ProSitePatterns Serine proteases, subtilase family, serine active site. 531 541 IPR023828 -
Car04g00933 752 ProSiteProfiles Serine proteases, subtilase domain profile. 116 592 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00172 Car-Chr4:940000 Car04g00933 Car-Chr4:5351069 0 dispersed
Car04g00933 Car-Chr4:5351069 Car04g01067 Car-Chr4:6121382 0 dispersed
Car04g00049 Car-Chr4:256959 Car04g00933 Car-Chr4:5351069 1.16E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00933 - - csv:101206801 1212.21