Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00936 ATGGCCGGGATTTTCGCCGGCGGTAGCGACTGTCCACCGGCTTCGGCTTTACTGGATTTTGTTCGCGATGTCGTTCGAATGTCGGCGGGGACCGGCAGTGGAGGGGTTTTCAAGAAGGATTGTACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAGATCAGAGACTTTAATGGCGTCAAATTTCGACATGTTGGTGCATCTTCTTCTTCTTCTTCTTTTTGTGGCGCTGTTACCGTGAGGGATTCGTCTCCGTCTTCGTGGCTATGTGATTTAGTGACGGCGTTGAAGGATACTGAGCGTCTCATTTTTGCCGCTTCGACTTTCCGGTCCTGCGGTTCTTCTTCTGAAGAAGTTGCCAATAAGATAATCTTTCAATTCCAATGCGTGACATGGAAGTTAGAGAAGGCATTGAGCAATCTTCCTTATGATCGCCTTGATATATCAGAGGAAGTTCAAGAACAGGTAGAATTAGTGAGAGCTCAGTTGAGAAGAGCAGCTGAAAAATATGGGTCTCTGACTGCAATTCCGCCATCAGTTGTTCAATCTCAGTTGCTGAAGAAAAATGTGGACCTGTTAAACCTGAACAACTGTGTTGATAACTTTCATGTTGAGGAGAATGGTATCGTTGACCATGAGATTACAGTGAAATTTGATGTCTTTCCAAATTGTAGAGGGTTGATGAATAGGGGTCTGGATCAGATTGAGAAACTTCCATCCTCCTCAGAGGGTTGTTCTGATGGACAGAATGACTCTGCCAAAAAGAGTGGAGACCAGGTGAAGAACCCAGACGCGGTTCCAATCCCTGATGATTTTTTATGCCCCATATCCCTGGAAATCATGAGGGATCCTGTTATTGTGTCCACAGGCCAGACGTATGAGAGATCTTATGTACAGAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAGAATTTGATTCTCACCCCAAATTATGTGCTGCGAAGTCTTATTAGTCAATGGTGTGTTAACCACAATATTGAGCAACCTACAGGACTAACCAATGGGAAGATCAAAAAGTGTGATGGGTCGTACCGTGATGTGTGCGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAACTAACTAGCCATTCAATTGAGGAGCAGAGAGCATCTGTGACCGAACTTCGATCTCTATCGAAAAGAAGCACGGATAATAGAATACTGATTGCCGAAGCAGGAGCAATTCCTGCTTTGGTCAATCTATTAACTGTTGGTGATGTTTTAATACAAGAAAATGCAGTTACTTCCATTCTGAACCTTTCAATATATGAGAACAACAAGGGACTCATTATGCTTGCTGGTGCCATACCTTCGATTGTCCAAGTTCTGAGAGTTGGAAGTATGGAAGCGAGAGAAAATGCCGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGATTCTGGGGCCATTCCGGCTCTTGTGAATTTACTTGAAAATGGAAGCTCAAGAGGGAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGTATTTATCAGGGTAACAAGGGAAGGTCTGTGAGGGCAGGGATCATTCCAGCTCTATTAAAGATGCTTACGAACTCAGTTAACTCCATGGTCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTCCTAATAGACCTGCTGAGGACCGGATTGCCTCGCAACAAAGAAAACGCTGCTGCAATTTTGCTTGCTTTGTGTAAGAGAGATACAGAAAATCTTTCCTGCATGAGTAGGCTGGGTGCCGTGATTCCACTGACAGATCTCGCCAAGAGTGGCACAGAGAGAGCAAAGAGGAAGGCTATTTCTCTGTTGGAGCATCTTCGAAAGCTGCAGCAGCAGCAGCAGCAGATATAG 1968 45.12 MAGIFAGGSDCPPASALLDFVRDVVRMSAGTGSGGVFKKDCTDLVRRIVLLTHLFEEIRDFNGVKFRHVGASSSSSSFCGAVTVRDSSPSSWLCDLVTALKDTERLIFAASTFRSCGSSSEEVANKIIFQFQCVTWKLEKALSNLPYDRLDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKNVDLLNLNNCVDNFHVEENGIVDHEITVKFDVFPNCRGLMNRGLDQIEKLPSSSEGCSDGQNDSAKKSGDQVKNPDAVPIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLILTPNYVLRSLISQWCVNHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIEEQRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTVGDVLIQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGDSGAIPALVNLLENGSSRGKKDAATALFNLCIYQGNKGRSVRAGIIPALLKMLTNSVNSMVDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTENLSCMSRLGAVIPLTDLAKSGTERAKRKAISLLEHLRKLQQQQQQI 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5378929 5382573 + Carg00111-RA Car04g00936 146361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00936 655 Pfam Armadillo/beta-catenin-like repeat 402 440 IPR000225 GO:0005515
Car04g00936 655 Pfam Armadillo/beta-catenin-like repeat 484 522 IPR000225 GO:0005515
Car04g00936 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 494 521 IPR000225 GO:0005515
Car04g00936 655 MobiDBLite consensus disorder prediction 242 260 - -
Car04g00936 655 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Car04g00936 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 453 495 IPR000225 GO:0005515
Car04g00936 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 412 454 IPR000225 GO:0005515
Car04g00936 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 535 577 IPR000225 GO:0005515
Car04g00936 655 Coils Coil 153 173 - -
Car04g00936 655 Pfam U-box domain 272 343 IPR003613 GO:0004842|GO:0016567
Car04g00936 655 Coils Coil 631 655 - -
Car04g00936 655 MobiDBLite consensus disorder prediction 242 270 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g00936 Car04g00053 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00586 Car-Chr2:4455461 Car04g00936 Car-Chr4:5378929 3.50E-19 dispersed
Car04g00936 Car-Chr4:5378929 Car13g00102 Car-Chr13:732289 1.49E-166 dispersed
Car04g02629 Car-Chr4:20494167 Car04g00936 Car-Chr4:5378929 9.04E-06 dispersed
Car13g00744 Car-Chr13:8486765 Car04g00936 Car-Chr4:5378929 4.40E-14 dispersed
Car18g00141 Car-Chr18:771106 Car04g00936 Car-Chr4:5378929 1.25E-13 dispersed
Car15g00890 Car-Chr15:5383216 Car04g00936 Car-Chr4:5378929 0 transposed
Car04g00053 Car-Chr4:283576 Car04g00936 Car-Chr4:5378929 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00936 - - csv:101221534 1095.88