Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00946 ATGGAGGACAAACACGTTGCTTTTGAATCCGTCCCTGTAAATGAAGATCTTGACGCCTCTATTTCTCACGCCCATGTTGACCATGGCTGGCAGAAGGTTACCTACGCCAAGCGTCAGAGGAAGACGGCCAAGCCCTCCGCCGATGCTGGTTCCGCCAAAATCGTGCCTAATGGTACCGTTTCCGTCCCCGGCGCGGACAACGTTTTTCGCTCGCTGGAGCAGAAATCGGAGGAGCGACGCCGCCGAATTGCTGAGGCGCAGAAGGCGGCTGCTGTTGACGACGATGAGGCTGTTCCGGTTAGATCGAAGATCAGGTCCGATGATGAGGATGGCGAGGACAGTGATGGAGTGGGTGTGGAGAACGGAAAGCCTAGCGAGGATGCCAAGAAGGTGAAGCAAAAGAAGCCGAAAAAGCCTAAGATTTCGGTGGCGGAGGCGGCTGCGAAGATTGATGTAAACGATCTGTTGGCGTTTTTGGCCGATGTGTCGGGCTCGTACGAGACTCAGCAGGATATTCAGCTAATGAGGTTTGCGGATTATTTTGGTCGCGCATTCTCGGACGTGAGCGCTTCTCAATTTCCGTGGGTGAAAATGTTTAGGGAGTCTCCAGTAGCTAAGATTGTTGATACCCCCCTCTCGCATATTTCTGCGGATGTCTATAAGGCGTCAGTTGATTGGCTTAATAAACTTTCTCTTGAGGCACTCAACTCTTTCGTTTTATGGTCTTTAGATAGCATCCTTGCTGACTTTGCGGCTCAACAAGCTAGTGCCAAAGGCTCTAAAAAGGGAGCACAACATGCTTCGTCAAAATCCCAGGTTGCCATATTTGTAGTCCTAGCAATGGTATTACGAAGAAAACCTGAGATTTTCATTCACGTGTTGCCAACAATAAGGGAAAACTCAAAGTATCAAGGACAGGACAAGCTTCCAGTACTTGTCTGGATGATAGTTCAGGCTTGTCAAGCAGATCTTGCAATAGGGCTTTATGCATGGGCACATAACCTTTTGCCCATAGTTAGTGGTAGAAGTTGTAATCCCCAGTCTAGAGATTTAATTTTGCAGCTAGTGGAAAGAATTTTGTCCTCTCCAAAAGCTCGTACTATTCTAGTAAATGGTGCAGTCAGGAAGGGGGAGAGATTGATTCCGCCTTCTTCATTTGAAACACTTCTACGTGTTACTTTCCCTGCCCCATCAGCTAGAGTGAAGGCTACTGAAAGGTTTGAGGCCATCTATCCAACCTTGAAGGAGGTTGCACTTGCTGGCTCTCCTGGTAGTAAAGCCATGAAACAAGTTTCACAGCAGATATTTAGTTTTGCTGTCAAAGCAGCAGGAGAAAGTGTTTCAGCGCTATCTGGAGAAGCAACTAACGTTTTCATTTGGTGTTTGACGCAAAATGTTGATTGCTACAAGCAATGGGACAAGATTTATGAGGATAACCTAGAAGCTAGTGTTTCTGTTTTGAAAAAGCTTTCTGATGACTGGAAAAAGCTTTCGTTAAATCTAGCTCCTTTTGATGCTCTGAGAGAGACATTAAAAAGTTTCAGAATCAAGAATGAGAAGGCATTGGCTGATGAAGAAGAGGATGATCGCCAGTCAATATATAAGGAGGCAGATAAGTATGCTAAGGCATTACTGAACAGGGTTTCACGAGGCCATGGATGTCTCAAAAGTATGGCTCTTATCGTCATCGCTATCGGCGTTGGTGCTGCATTCATGTCCCCGAACATAGAGTCTTTGGATTGGGAGAAACTCACTGCTTTCATCCCACAACACTCTTTCTGA 1782 46.41 MEDKHVAFESVPVNEDLDASISHAHVDHGWQKVTYAKRQRKTAKPSADAGSAKIVPNGTVSVPGADNVFRSLEQKSEERRRRIAEAQKAAAVDDDEAVPVRSKIRSDDEDGEDSDGVGVENGKPSEDAKKVKQKKPKKPKISVAEAAAKIDVNDLLAFLADVSGSYETQQDIQLMRFADYFGRAFSDVSASQFPWVKMFRESPVAKIVDTPLSHISADVYKASVDWLNKLSLEALNSFVLWSLDSILADFAAQQASAKGSKKGAQHASSKSQVAIFVVLAMVLRRKPEIFIHVLPTIRENSKYQGQDKLPVLVWMIVQACQADLAIGLYAWAHNLLPIVSGRSCNPQSRDLILQLVERILSSPKARTILVNGAVRKGERLIPPSSFETLLRVTFPAPSARVKATERFEAIYPTLKEVALAGSPGSKAMKQVSQQIFSFAVKAAGESVSALSGEATNVFIWCLTQNVDCYKQWDKIYEDNLEASVSVLKKLSDDWKKLSLNLAPFDALRETLKSFRIKNEKALADEEEDDRQSIYKEADKYAKALLNRVSRGHGCLKSMALIVIAIGVGAAFMSPNIESLDWEKLTAFIPQHSF 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5450311 5455129 + Carg00121-RA Car04g00946 146371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00946 593 Coils Coil 69 89 - -
Car04g00946 593 MobiDBLite consensus disorder prediction 36 66 - -
Car04g00946 593 MobiDBLite consensus disorder prediction 86 138 - -
Car04g00946 593 Pfam TMEM214, C-terminal, caspase 4 activator 114 569 IPR019308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00946 - - - csv:101205264 962.214
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g00946 Car04g00061 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00061 Car-Chr4:321412 Car04g00946 Car-Chr4:5450311 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g456 . . . . . . . . Cmo04g01088 . Cma04g01010 Cma04g00064 Car04g00946 Car04g00061 Sed06g0178 . . Bhi07g00361 Tan04g1544 Cmetu10g1184 Lac13g1416 Hepe01g0553 . . Cla07g00573 Cam07g0600 Cec07g0669 Cco07g0640 Clacu07g0602 Cmu07g0639 Cre07g0975 . . . Cone9ag0416 Lsi04g01122 . . Cme10g01588 Blo06g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004619 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00946 Car_Chr04 FPKM 5.231023 4.495965 3.896098 4.049315 9.287034 7.708064 8.879928 6.837647 7.131629 6.889809