Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00961 ATGGCAGCTCAATTTGCTGCTGAAGCTACTCTTAGGAGGGTACATGCTGCTCAAAAGGATGATGACATGCCTCCAATCGAAGCCATTCTTGCACCTTTGGAGGCTGAGCTCAAGCTTGCACGACAGGAGATTGCTAAGCTTCAAGATGACAATAAAGCATTGGATCGTCTTACCAAATCAAAGGAAGCAGCTTTGGTTGATGCTGAGAGGACTGTTCAAAGTGCCCTGGCCAAGGCCTCTATGGTGGATGATTTACAGAATAAAAATCAGGAGTTGATGAAACAGATAGAGATTTGCCAGGAAGAAAATAAAATCTTGGACAAGATGCACAGACAGAAAGTTGCAGAGGTTGAAAAATTAACGCAAACTGTGAGGGAGCTGGAGGAGGCTGTTCTTGCTGGTGGTGCTGCAGCAAATGCTGTGAGGGATTACCAGCGCAAAGTTCAAGAGATGAATGAGGAAAGGAAAACTCTTGATAGAGAGTTGGCTCGTGCAAAGGTAACAGCCAACAGAGTGGCTGTTGTAGTAGCGAATGAATGGAAAGATGCAAATGATAAGGTTATGCCTGTAAAACAGTGGCTTGAAGAACGAAGATTTTTGCAGGGAGAAATGCAGCAACTTCGTGATAAACTTGCTATAATGGAACGAACTGCGAAGTCTGAAGCTCTATTGAAAGAGAAGTATCAGCTGCGACTTAGAGTGCTTGAAGAGAGCTTGAGAGGGTCTTCTGGCAGTAACAATCGGAATACTCCTGAAGGGAGAAGTATAAGCAATGGCCCCTCTCGTCGGCAATCTCTGGGTGGAGTTGACAACATTTCGAAATTAACTTCCAATGGATTTTTATCGAAAAAGACGCCAGGTTCTCAGTATAGACCTTTGTCCTCAAGCAGTAGCACAGTGTTGAAACATGCTAAAGGCACGTCGAAATCATTTGATGGAGGCACGAGGTCATTGGACCGAGGAAAGGTGTCTTTAAATAGACTTCTACCCAGTTATTCATTCAATCAGTCCTGTGATGCAAGCAAGGACAGTGAAGTAAATAATGATTGGAAAAGTAATCCTGATGAAAAGGGAAACGAGTCTCCCACACTTGAGAGTGAAGACAGTGTCCCGGGTACGTTGTATGATTTACTTCAGAAGGAGGTTATAGCTTTGAGAAAAGGCGGCCATGAGAAAGATCAAATCCTTAAAGACAAGGATGACGCCATTGAGATGTTAGCAAAGAAGGTAGAGACGCTGACCAAAGCAATGGAGGTTGAGGCAAAGAAGATGAGAAGGGAAGTGGCTGCCATGGAGAAGGAGGTAGCAGCTATGCGCGTGGAGAAAGTGCAGGAGAACAAGGCAAAGCGATTTGGTGGCAGCACCAAGGGCCCCGTTAGTGTAGCACAACTGCATCCCGGAAGGAATGTTGGACGCGGTGGGTTGAATCGCAGCACTCAATAA 1443 45.25 MAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALVDAERTVQSALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDKLAIMERTAKSEALLKEKYQLRLRVLEESLRGSSGSNNRNTPEGRSISNGPSRRQSLGGVDNISKLTSNGFLSKKTPGSQYRPLSSSSSTVLKHAKGTSKSFDGGTRSLDRGKVSLNRLLPSYSFNQSCDASKDSEVNNDWKSNPDEKGNESPTLESEDSVPGTLYDLLQKEVIALRKGGHEKDQILKDKDDAIEMLAKKVETLTKAMEVEAKKMRREVAAMEKEVAAMRVEKVQENKAKRFGGSTKGPVSVAQLHPGRNVGRGGLNRSTQ 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5554706 5560243 - Carg00136-RA Car04g00961 146386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00961 480 MobiDBLite consensus disorder prediction 334 370 - -
Car04g00961 480 Coils Coil 141 168 - -
Car04g00961 480 MobiDBLite consensus disorder prediction 344 363 - -
Car04g00961 480 Coils Coil 82 130 - -
Car04g00961 480 Coils Coil 407 441 - -
Car04g00961 480 Coils Coil 30 57 - -
Car04g00961 480 MobiDBLite consensus disorder prediction 240 319 - -
Car04g00961 480 Pfam Microtubule-associated protein 70 1 462 IPR009768 GO:0007010|GO:0008017
Car04g00961 480 MobiDBLite consensus disorder prediction 240 314 - -
Car04g00961 480 MobiDBLite consensus disorder prediction 447 480 - -
Car04g00961 480 Coils Coil 190 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00961 - - - cmax:111483438 872.848
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g00961 Car04g00073 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00961 Car-Chr4:5554706 Car09g01090 Car-Chr9:10886154 1.92E-25 dispersed
Car03g00125 Car-Chr3:1987633 Car04g00961 Car-Chr4:5554706 0 transposed
Car03g00548 Car-Chr3:5357421 Car04g00961 Car-Chr4:5554706 3.15E-63 transposed
Car07g01070 Car-Chr7:6281298 Car04g00961 Car-Chr4:5554706 0 transposed
Car04g00073 Car-Chr4:392579 Car04g00961 Car-Chr4:5554706 3.79E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g500 . . . . . Bpe10g01001 Bma14g01927 Bma15g00026 Cmo04g01102 . Cma04g01029 Cma04g00077 Car04g00961 Car04g00073 Sed04g3001 . . Bhi07g00400 Tan04g1510 Cmetu10g0919 Lac13g1329 Hepe01g0590 . . Cla07g00538 Cam07g0579 Cec07g0638 Cco07g0604 Clacu07g0582 Cmu07g0618 Cre07g0954 . Cone19ag0733 Cone6ag0360 Cone9ag0390 Lsi04g01101 . . . Blo06g01031 . Bda07g01745 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01255 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000868 2 2 0 4 3 3 5 3 3 2 2 2 5 1 2 6 3 6 5 3 2 1 2 3 3 2 2 6 2 2 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00961 Car_Chr04 FPKM 20.009371 22.604429 16.332678 16.038931 20.53504 22.573305 23.099234 7.445488 8.150119 8.771945