Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00963 TCTGACGAAAGAAAGAAAGAAAGAAAGCGGCGAATGGCAATGGCGAAAAACGATGATGAACCGGAGGTTCAGAGCTCCGTCAAGAGGCTAAAATGCTCTAAGCACGACGATGAACAGCTCGAAAATGAAGAAGAAGAAGAAGAGCAGGTGAGTGAACTTCCATTGAAGCCAGGCCTGTTCTTCTACCCAATGACGCCAACTTCCTTCGTGGTCTCCGATGCTCTGGAGCCCGATTTCCCAATCATCTACGTCAACAAAGTCTTCGAGATCTGTACCGGATATCGCGCCGATGAGGTCCTCGGCCAGAATTGTCGGTTCTTACAATATAGAGATACTCATGCACAAAGGCGCCACCCTTTGGTAGATCCAGTGGTTGTTTCTGAAATCAGAAGATGTCTTGAGGAAGGCGTTGAATTCCAAGGTGAACTCCTCAATTTCAGAAAGGATGGCACTCCTATGGTGAATAGGTTACGGCTTGCACCGATACATGATGATGATGGTACTGTAACACACATTATAGGAATTCAAGTGTTTTCTGAGACAAAGATAGACCTTAATCGGTTGTCATATCCCGTTTTCAAAGAAACTTGTGCAATAAAATATGATCTATCAGGCAAAAGTGCTCATCTGATTGATCAATCACCATTTGGTCAGCATAAAAAAATCTGTGGGATACTACAGCTTTCAGATGAAGTCTTAGCCCATAACATTTTATCACGCTTGACGCCACGAGATGTTGCATCTGTTGGATCAGTGTGCCGAAGGATTCGTCAATTGACAAAGAACGAACATTTAAGGAAGATGGTATGTCAGAATGCATGGGGAAGAGAAGTGACTGGAACATTGGAACAAATGACAGATAAACTTGGTTGGGGGCGCTTGGCCAGGGAACTTACAACTCTTGAAGCTGTATGTTGGAGAAAACTGACAGTTAGGGGAGCTGTGGAGCCTTTACGTTGCAACTTTAGTGCTTGTGCAGCAGGTAATCGACTTGTATTATTTGGTGGGGAAGGAGTCAATATGCAGCCCATGGATGATACCTTTGTTCTCAATCTTGATGCTGCAAATCCAGAGTGGCGAAGAGTAAGCGTGAAATCCTCCCCGCCTGGACGTTGGGGCCACACTTTATCATGTTTGAATGGTTCTTGGTTAGTTGTTTTTGGTGGATGCGGCAGTCAAGGATTGCTCAACGATGTGTTTGTACTCGATTTGGATGCTCAGCAACCAACGTGGAAAGAAATCTCTGGTGGAGCTCCTCCATTGCCTAGATCCTGGCATAGCTCCTGTATGATCGAAGGTTCTAAACTGGTTGTTTCAGGTGGATGCACAGATGCTGGGGTGCTTCTCAGTGACACATACTTGTTGGATCTAACAACAGACAAGCCAACCTGGAGAGAGATTCCCACATCCGGGACTCCCCCATCTAGATTGGGACATTCTCTGTCAGTTTACGGTCGGACAAAGATTCTAATGTTTGGTGGACTTGCCAAGAGCGGACACCTACGCTTACGATCGGGCGAGGCGTACACCATAGATTTAGAAGAGGAAGAACCCCGGTGGAGGCAACTTGAGTGCAGTGCATTAACTGGCATAGGCGGCCAGAGTGCTGTAGTTCCTCCACCAAGACTCGATCATGTAGCAGTCAGCATGCCCTGTGGAAGGATTATCATTTTTGGAGGCTCAATTGCCGGGTTACATTCACCTTCTCAACTGTTCCTTTTGGATCCTTCCGAGGAGAAACCATCATGGAGGATTCTCAATGTTCCTGGACAACCACCAAAATTTGCTTGGGGACACAGTACTTGTGTGGTTGGAGGCACAAGAGTTTTGGTATTGGGCGGCCACACCGGGGAAGAATGGATACTCAATGAATTGCACGAACTCTGCTTAGCTAGTGGGCAAGATTCAGATCTTTGA 1917 46.32 SDERKKERKRRMAMAKNDDEPEVQSSVKRLKCSKHDDEQLENEEEEEEQVSELPLKPGLFFYPMTPTSFVVSDALEPDFPIIYVNKVFEICTGYRADEVLGQNCRFLQYRDTHAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPMVNRLRLAPIHDDDGTVTHIIGIQVFSETKIDLNRLSYPVFKETCAIKYDLSGKSAHLIDQSPFGQHKKICGILQLSDEVLAHNILSRLTPRDVASVGSVCRRIRQLTKNEHLRKMVCQNAWGREVTGTLEQMTDKLGWGRLARELTTLEAVCWRKLTVRGAVEPLRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGSQGLLNDVFVLDLDAQQPTWKEISGGAPPLPRSWHSSCMIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPTWREIPTSGTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEEEEPRWRQLECSALTGIGGQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASGQDSDL 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5568510 5571300 - Carg00138-RA Car04g00963 146388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00963 638 Pfam PAS domain 75 176 IPR000014 -
Car04g00963 638 Pfam Galactose oxidase, central domain 319 369 - -
Car04g00963 638 Pfam Kelch motif 543 590 IPR011498 GO:0005515
Car04g00963 638 Pfam F-box domain 225 265 IPR001810 GO:0005515
Car04g00963 638 Pfam Galactose oxidase, central domain 433 484 - -
Car04g00963 638 Pfam Galactose oxidase, central domain 384 429 - -
Car04g00963 638 MobiDBLite consensus disorder prediction 1 38 - -
Car04g00963 638 MobiDBLite consensus disorder prediction 1 49 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00963 K12116 FKF1; flavin-binding kelch repeat F-box protein 1 - csv:101222712 1216.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g00963 Car04g00078 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00963 Car-Chr4:5568510 Car12g00845 Car-Chr12:8218223 0 dispersed
Car05g00635 Car-Chr5:3813007 Car04g00963 Car-Chr4:5568510 4.81E-12 dispersed
Car04g00078 Car-Chr4:422147 Car04g00963 Car-Chr4:5568510 1.82E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g502 . Blo16g00757 . Bda11g00188 Bpe13g01006 . . . Cmo04g01103 . Cma04g01032 Cma04g00079 Car04g00963 Car04g00078 Sed04g2999 . . Bhi07g00405 Tan04g1496 Cmetu10g0634 Lac13g1318 Hepe01g0598 . . Cla07g00531 Cam07g0573 Cec07g0622 Cco07g0597 Clacu07g0576 Cmu07g0611 Cre07g0943 . . Cone6ag0358 Cone9ag0388 Lsi04g01097 . . . . . . Bda11g00188 . . . Bma06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008842 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00963 Car_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.141402 0.0 0.0