Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00966 ATGGCGGCTCTAGCTTCTTCAGGAACCTCCTTCTTCTCCACTGCTTCTCCTCACCCTAAATCAAGGCGCATCTCTAGAGTTGTTCGTATGGCATATCAGGAGAACGGGCCTTCTCTGGCCGTCGTCGGCGTCACCGGCGCCGTCGGCCAGGAATTTCTCTCTGTCCTTTCTGACCGTGGATTCCCTTATCGCTCCATTAAGATGCTAGCCTCGAAGCGCTCCGCTGGCAAGTCTGTTCGCTTTCATGACGAAGAGCATATTGTTGAGGAGCTCACTGCGGATAGCTTCGATGGTGTGGACATTGCTCTCTTCAGCGCTGGAGGATCCATCAGCAAGAAGTTTGGACCGCTCGCCGCTGAGAAGGGGACTATTGTGGTCGATAATAGCTCCGCATTTCGGATGGATGAGAATGTGCCTCTTGTTATTCCGGAGGTTAATCCCGAAGCCATGAAGGGGATTAAGGTTGGGACTGGCAAGGGCGCTTTGATTGCCAATCCTAATTGCTCAACCATCATCTGCTTGATGGCTGTCACTCCTCTGCATCGTCACGCTAAGGTTTTACGCATGGTTGTTAGTACATATCAAGCAGCTAGTGGTGCTGGTGCTGCAGCAATGGAAGAGCTTGTGCAACAGACTCGCGAGGTCCTGGAAGGAAAACCACCAACTTGTAATATATTTAGGGATCAGTATGCTTTCAATTTATTCTCCCACAATGCATCTGTTCTTTCAAATGGATACAACGAAGAGGAAATGAAATTAGTAAAAGAAACTCGGAAAATATGGGTGAGTGTTGGTTGTGAATTATGGATACCACTTACGTCCTGA 825 48.85 MAALASSGTSFFSTASPHPKSRRISRVVRMAYQENGPSLAVVGVTGAVGQEFLSVLSDRGFPYRSIKMLASKRSAGKSVRFHDEEHIVEELTADSFDGVDIALFSAGGSISKKFGPLAAEKGTIVVDNSSAFRMDENVPLVIPEVNPEAMKGIKVGTGKGALIANPNCSTIICLMAVTPLHRHAKVLRMVVSTYQAASGAGAAAMEELVQQTREVLEGKPPTCNIFRDQYAFNLFSHNASVLSNGYNEEEMKLVKETRKIWVSVGCELWIPLTS 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5579388 5580899 + Carg00142-RA Car04g00966 146391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00966 274 Pfam Semialdehyde dehydrogenase, dimerisation domain 178 261 IPR012280 GO:0008652|GO:0016620|GO:0046983
Car04g00966 274 Pfam Semialdehyde dehydrogenase, NAD binding domain 39 152 IPR000534 GO:0016620|GO:0051287
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00966 K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] - csv:101206329 461.455
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g00966 Car04g00081 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00081 Car-Chr4:431978 Car04g00966 Car-Chr4:5579388 9.35E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g506 . . . . . Bpe10g01005 . Bma15g00024 Cmo04g01106 . Cma04g01035 . Car04g00966 Car04g00081 Sed04g2992 . . Bhi07g00410 Tan04g1488 Cmetu10g1235 Lac13g1310 Hepe01g0605 . . Cla07g00525 Cam07g0564 Cec07g0614 Cco07g0589 Clacu07g0565 Cmu07g0602 Cre07g0934 . . Cone6ag0356 Cone9ag0387 Lsi04g00990 . . . Blo06g01033 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005424 1 1 1 1 2 1 2 1 1 0 1 1 2 0 1 2 1 2 2 1 1 2 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00966 Car_Chr04 FPKM 7.609274 8.540738 12.527551 12.627091 23.200876 20.749825 21.3055 6.378795 7.567113 6.621629