Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00975 ATGGGCCTATCGACTGCCACTACTTCTGTTTCTGAGGCCATTCAGCTCTGTGTATTTGATTCAAGGAGAGGACAACAAGAGGGACAAGAGCTGGATAAGATATTATTTTTCTATCCAGCTGATTTACCCTTTACAAAACAATTATATATCATTGGGCTCAGCGAAGGACTTATCACATTTACAAGAACATTCTCCCCAGAGGCTGCTTGTGAGGTCATTGAAGCAGAGAAGCACTCTCATGTATTTTTTGAGGCAGAGCAAGATATATGGATGATTTTGGTAGTGGAGAAAAATAAGGAGTTAGAAGCAATTTGGCGGATGGATGCATTGCAGAAGCTTCTTAAGGAAATCCACTCTCTTTTTCTAATGTTTCACGGATCTATAAGGTTATTACTTGAGAAAGAACCGACAGGAGAAGCTTCCAGATCACATTTGTATTCCTTCATCACTGATTATCTGAATGGTAAGTCATTTGCTGCCACTTTTCAGCTAAAATCATGTGAAAAGCGGTCTGCATTGGATAGATTGGGATTGAAATTGCTGCATTTCATGCCTAATTCCTTTCTTTCTTTCGAGACAGATTTTCTTGTTGGAAAGAAACTACAGTTACCATCATTTGTAGACTGTTTAAAGGAACGTGGAACTGTACAGATGCTGACCATAGGGCGAGATGCTGCCATTGAAGTTCAGGCACTCGTTAGAACACTTGATTCTTGCATTGGAAACGCATCATGCCACTCTCTGATTTTATTTCAGGACTTACTGGTGTCTACTACACTTTCTCCTGATGACACTACAAATTTATTTTCATATGCTGTTCTGAGATTGACTCCACGTGTGTTATCTTCTGGCACAAGTTCTTGGTCCTATTTAATCAGAGGAAATGCTGCATCTCATGTTGCTCAACATGGTGGAAATGTTGGTAATCGTGTGATACGACCCTTGCAGCATGGGAAATGGTCAAAAGGAAAGGATGGTTTTCTAGAAACTGATATTTGGGGTATGGGGGCAAGTGGCTGGGTTGGTTCTACCCCAAAAATCTGCCTTTTTCAAACGGAGGAGCAAATGTACCTGTATGTATACCAGAATAAAAGTCTGACTCTGATTCTTCTTGTTCCTGTTTCCTCAGTACCTAACGAGGAACTAGGCATTTCAATCGTCAGGCAGCATATTCTTGAAAATGCGTCCCTGAAGATCATGAAAATTGAAGAAACATTGTCAAAGGGCTGGGGTGGGGAAAATGCTTATCATGTTGGTGGGTATCGTTATTTACTGGTAGATGGTGACAGACAAGTATCCAGGGCTTCACCACCAGGAAAAGTTACCACCCTCGCAAAGGAGTCTTTACTTGCCATGAGCAAACTCAGAGAAAAGGTAGATCTGGAGAAGAGTCGTGCAAAACAGGATAGTGTTGATGAGGAAAAGGAACTGGAAGTAACTATCAGAGCAAAAAACAATGCTTGGGCTATTTCTCGAATCACAAGAGGGAAAGAGCTTTATATGGTTCTGGAGAAAGCCAACGAAACCCTGCTCTATGCCTCTGATATGGTGGAGAAATTCAGCAACAGGTACTGCAACGGAGCATTCTCCTTGGATTAG 1599 41.53 MGLSTATTSVSEAIQLCVFDSRRGQQEGQELDKILFFYPADLPFTKQLYIIGLSEGLITFTRTFSPEAACEVIEAEKHSHVFFEAEQDIWMILVVEKNKELEAIWRMDALQKLLKEIHSLFLMFHGSIRLLLEKEPTGEASRSHLYSFITDYLNGKSFAATFQLKSCEKRSALDRLGLKLLHFMPNSFLSFETDFLVGKKLQLPSFVDCLKERGTVQMLTIGRDAAIEVQALVRTLDSCIGNASCHSLILFQDLLVSTTLSPDDTTNLFSYAVLRLTPRVLSSGTSSWSYLIRGNAASHVAQHGGNVGNRVIRPLQHGKWSKGKDGFLETDIWGMGASGWVGSTPKICLFQTEEQMYLYVYQNKSLTLILLVPVSSVPNEELGISIVRQHILENASLKIMKIEETLSKGWGGENAYHVGGYRYLLVDGDRQVSRASPPGKVTTLAKESLLAMSKLREKVDLEKSRAKQDSVDEEKELEVTIRAKNNAWAISRITRGKELYMVLEKANETLLYASDMVEKFSNRYCNGAFSLD 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5621595 5628942 - Carg00151-RA Car04g00975 146400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00975 532 Pfam First Longin domain of INTU, CCZ1 and HPS4 17 126 IPR043987 GO:0016192
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00975 - - - csv:101203882 896.73
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g523 . . . . . Bpe10g01007 . Bma15g00022 Cmo04g01115 . Cma04g01045 Cma04g00088 Car04g00975 . . . . Bhi07g00420 . . Lac13g1294 . . . Cla07g00517 Cam07g0553 Cec07g0606 Cco07g0578 Clacu07g0556 Cmu07g0594 Cre07g0926 Cone13ag0727 Cone19ag0730 . . Lsi04g00996 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005897 1 2 1 1 1 1 1 2 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00975 Car_Chr04 FPKM 52.102921 54.924664 61.998741 63.201321 43.200893 40.455879 46.292355 123.342384 127.19986 141.762558