Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00979 ATGGAGACATCGGCTTCTAATTCCGATCCTTACTCCAATTCTTCTTCACCCACAAGTGCTCGTACCTCCTCCAGATATGGGGTCTCGCTCCCTTCGCCGAATTTCTTCCGTTCGCCTTTGTCCGTTATCTTGGATTACTCTGGAATTCTTCCCACTAGGGCGGTTCGTCATGAATCGGAGCCTGTAATCAACGCCGCTTCCACTCCTGATTTGCGGGTTTATTCTCAAAATCAAAATCACTTAATGACCACTTCTTCGTCTTCTACTGCCTCAACCTCTTCCGGTAATACCGTCTCCTCTGGGGAGGTTTCGATTAGGATTATTGGGTCTGGTGAGCAAGATCCTCCTCCCAGTGTGTTGTTGCCGCCAAATCAGGCTCCGGTTGGACAAGCGGGTTATGAGCAAAATGCCAGGCTTCCTATTTCTGGGGATCAGCCGGATTCCCCTGACGAGGAACGAGTTCCTTTGGTGTCAACTTCTTCTTCATCTATTCAATCTGGAAGCAGTCGTGTCCATGCAGAATCTGGAAATGGCACGGAAGAGACTGCCAATAGAGATTCGTCATACCAGAGATATGATATTCAGCAGGTTGCCAGATGGATTGAACAGATTCTTCCATTCTCTTTGCTATTGCTGATAGTCTTTATCCGTCAGCATTTAGAAGGTTTTTTCATCACAATTTGGGTATCAGCTGTTCTGTATAAGTCGAACGATATTGTCAAGAAACAGACTGCTCTAAAGGTGGGGGAGAGGAAAATTTTTGTCCTTGCCGGTACTTCTATCGCATTTTTGGTTCATGTAATTGGGATTTACTGGTGGTGTCATAGTGATGATCTTCTGTCCCCGTTAGTCATGCTTCCACCGAAGACAGTTCCACCTTTTTGGCATGCCTTGTACATCATTTTGGTTAACGATACGATGGTGAGGCAGTTGGCAATGGCTTTCAAATGTCTTCTTCTTATCTACTACAAAAATGGCAGAGGCCATAATTTTCGCCGGCAGGGTCAAATTTTAACGCTTGTGGAATACTCTCTTCTGTTGTACCGTGCATTATTACCAGCACCCGTATGGTACCGGTTCTTTTTGAATAAAGATCAAGGGAGCCTCTTTTCATCACTGACAACAGGATTGTATTTAACCTTCAAGCTAACGTCTGTGGTTGAGAAGATTCAATCATTCGTTGCTGCGTTTAAGGCTCTATCACAAAAAGAAGTAAATGCTGCGGGAGACCTCTGTGCTATCTGCCAGGAGAAGATGAATGCTCCAATCCTGTTACGTTGTAAGCACATCTTTTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAAAGAACTTGCCCTCTTTGCCGGGCACTCGTAAAGCCTGCAGAACTTCGAACATTCGGTGATGGGTCAACCAGCTTACTCTTCCAACGAAAACCGTCGATTACTCGACATAACAATACTATCACTTCAACAAAGAAAGATATTGTTTATCAGATGAAAACAGGGGGAAGTAGAAGAACAAAGAAAAAGGGAAAACTAGACATCGAG 1533 44.29 METSASNSDPYSNSSSPTSARTSSRYGVSLPSPNFFRSPLSVILDYSGILPTRAVRHESEPVINAASTPDLRVYSQNQNHLMTTSSSSTASTSSGNTVSSGEVSIRIIGSGEQDPPPSVLLPPNQAPVGQAGYEQNARLPISGDQPDSPDEERVPLVSTSSSSIQSGSSRVHAESGNGTEETANRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWVSAVLYKSNDIVKKQTALKVGERKIFVLAGTSIAFLVHVIGIYWWCHSDDLLSPLVMLPPKTVPPFWHALYIILVNDTMVRQLAMAFKCLLLIYYKNGRGHNFRRQGQILTLVEYSLLLYRALLPAPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSQKEVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQRKPSITRHNNTITSTKKDIVYQMKTGGSRRTKKKGKLDIE 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5653397 5659235 - Carg00155-RA Car04g00979 146404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00979 511 MobiDBLite consensus disorder prediction 154 187 - -
Car04g00979 511 MobiDBLite consensus disorder prediction 81 106 - -
Car04g00979 511 MobiDBLite consensus disorder prediction 81 187 - -
Car04g00979 511 ProSitePatterns Zinc finger RING-type signature. 427 436 IPR017907 -
Car04g00979 511 Pfam Zinc finger, C3HC4 type (RING finger) 410 453 - -
Car04g00979 511 MobiDBLite consensus disorder prediction 1 34 - -
Car04g00979 511 ProSiteProfiles Zinc finger RING-type profile. 412 450 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00234 Car-Chr3:3602639 Car04g00979 Car-Chr4:5653397 0 dispersed
Car04g00979 Car-Chr4:5653397 Car07g01160 Car-Chr7:7000942 0 dispersed
Car04g00089 Car-Chr4:508737 Car04g00979 Car-Chr4:5653397 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00979 - K22379 csv:101207430 771.926