Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00987 ATGCGAGGTTTGTTGAAGATGAAACGGCTTATTGAGCTCTTCGTCTTGTTCGTTTTGGCTCCACTCTGTGCTAGATGCGTAAACCTACCTTTAAACGACGACGTTTTGGGCCTGATAGTGTTTAAAGCCGATGTTCAAGATCCGAAGCTGAAGCTCGCGACGTGGAACGAAGATGACGATAATCCCTGCAACTGGACTGGCGTCAAATGCAGTCCCGGATCCAATCGGGTCGTCGAACTCAACCTCAATGGATTCTCTCTCTCGGGTCGACTCGGCCGTGGACTTTTCCAGTTGGAGTTTCTGCAGAGATTGTCGCTCGCGAAGAACAATCTTAGTGGAAATATAAACCCCAATTTCTCTCGGGTCGGCAATCTTCAGGTGATTGATTTGAGTGGGAATAATTTCTCCGGTACTGTTCCGGATGAAGTTTTTACTCAATGTGGGTCTCTGAGAGTCATCTCTTTGGCTAACAACAAATTTTTTGGGAAAATTCCTGATAGTTTGAGCTTTTGTGGGAGTCTTATTGCAGTTAACTTGTCCTCGAATCAGTTTTCGGGTTCTTTGCCTTCTGGGATTTGGTCTTTTAGTGGGCTTCGATCTTTGGACTTGTCTGATAATGCTCTGGTGGGTGAAATTCCTAATGTAATTGAGAATTTGTATAATCTGCGGACTCTTAACTTGAGCAGGAATCGATTTTCTGGACAGATTCCTGATGGTATTGGGAACTGTTTGCTTCTGAGATCCATTGATCTTAGTAGGAATTCATTCTCTGGGAATCTTCCTCAGACAATGCAGAGACTTGTTTTGTGTGGTAATCTTATCTTAAGCAGGAATTTGTTGGAAGGTGATGTTCCAGAGTGGATAGGAGGAATGAAAAGCCTTGAAACTCTGGACTTCTCTGGGAACAATTTTACTGGCCGTATTCCTTCTACAATGGAAAATCTGCAATATCTAAAAGTATTGCATCTCTCTTCAAATGGCTTTACTGATAGCTTTCCGGAGTCTGTGATGAAATGCCAAAGCCTTTTGGCAATAGATTTCAGTCATAATTTGATCACGGGTAATCTTCCGCCAACTGGAAGTTTAGCCAAGCTGCAGTTTCTAAACCTGTCCGGGAATTCTTTTGTTGGTCCTATTCCAGAAACTATTGGAGATCTGAAATCTTTGAGCATTCTTGATTTGAGCTCGAATCGTCTGAACGAAACCATTCCAGATGCAATTGGAGGAGCTGTGTCCCTAATTGAGCTGAAGCTGGATGGGAATTTTCTAGGGGGTGAAATTCCCTCTTCAATTGGTCACTGTTCTTCCCTTACAAATCTGTTCATGTCACACAATAACTTAACTGGCCCGATACCAGCAGCATTAGCCAAACTCTCTTATCTACAAAATGTCGACTTATCCTTTAACAACCTCAATGGAACCCTTCCAAAGCAGTTGTCTAATCTTCCAAACCTTCATATGTTCAATATTTCTCACAACGACTTCAACAGTGAGCTGCCTACTGGTGGATTCTTTAACACCATCGCCCCTTCATCCGTTGCTGGCAATCCATCCCTTTGTGGCTCTGTTGTTAACAAGTCTTGCCCTTCCGTCCTTCCAAAACCTATTGTTCTTAATCCCAACTCCACTTCAGATTCCATTTCCAGCTCTCTGCCTCCAAGTAATAATCACAGAAGAAATAGAAATATCCTCAGCATTTCTGTGCTGATTGCCATTGGTGCTGCTGCTTTCATCATCATTGGTGTAATATCGATCACCATTCTCAACTTTCGAGTTCGATCACCCACGTCTTCTTCATCTGCAGCTGCACTTGCATTATCTATTGGGGATGATTTCAGTCATTCCTCCAGTCCTGATGCAAATTCTGGAAAGCTTGTGGTGTTATCAGGAGAACTTGACTTTAGCACAGGAGCACATGCCCTGCTGAACAAGGATTGTGAGCTTGGGCGTGGTGGATTTGGAGCAGTTTATCATACTGTTCTGCGGGATGGACACTCGGTTGCAATCAAGAAGCTTACGGTATCTAGCCTTGTTAAGTCGCAAGAGGATTTTGAGAGGGAAGTTAGGAAGTTTGGGATTGTCAGGCACCAAAATCTAGTGGCACTTGAAGGTTATTATTGGACTCCCTCGCTACAGCTCCTTATATACGAATTCGTCTCTGGAGGTAGCTTGTATAGGTTTCTCCACGAAGCATCAGACGACTATGTCCTGCCATGGAACGAGAGATTCGACATAATTCTTGGGACAGCGAAAGGTTTGGCTCACTTGCATCAATCAAACACAATCCACTATAACATAAAATCCAGCAACATTCTTATTGATTGTAATGGTCAACCTAAGGTTGGAGATTATGGTCTAGCTAGATTGCTGCCAATGTTAGACCGTTATGTTTTAAGTAGCAAGATCCAAAGCGCACTCGGTTACATGGCACCAGAGTTTGCTTGCAGGACAGTAAAGATTACCGAAAAATGCGATGTTTATGGCTTTGGAATATTGATTCTAGAGGTGGTTACTGGGAAGAGACCTGTCGAGTACATGGAGGACGACGTTGCAGTCCTCTGCGACATGGTCAGAGTAGCAGTGGAAGAAGGAAAAGCCGAAGAATGCATCGACAGCAAGCTGAGGGGTAATTTCCCTGTCGAAGAGGCCGTTCCCGTGTTAAAATTAGGCTTGATATGCACCTCCCATGTGCCATCAAACCGGCCGGACATGAGAGAAATGGTCAAAATATTGGAGATGATCAAATGCCCATCTGAATTACAAGAGGAGTTGGGATAA 2778 43.7 MRGLLKMKRLIELFVLFVLAPLCARCVNLPLNDDVLGLIVFKADVQDPKLKLATWNEDDDNPCNWTGVKCSPGSNRVVELNLNGFSLSGRLGRGLFQLEFLQRLSLAKNNLSGNINPNFSRVGNLQVIDLSGNNFSGTVPDEVFTQCGSLRVISLANNKFFGKIPDSLSFCGSLIAVNLSSNQFSGSLPSGIWSFSGLRSLDLSDNALVGEIPNVIENLYNLRTLNLSRNRFSGQIPDGIGNCLLLRSIDLSRNSFSGNLPQTMQRLVLCGNLILSRNLLEGDVPEWIGGMKSLETLDFSGNNFTGRIPSTMENLQYLKVLHLSSNGFTDSFPESVMKCQSLLAIDFSHNLITGNLPPTGSLAKLQFLNLSGNSFVGPIPETIGDLKSLSILDLSSNRLNETIPDAIGGAVSLIELKLDGNFLGGEIPSSIGHCSSLTNLFMSHNNLTGPIPAALAKLSYLQNVDLSFNNLNGTLPKQLSNLPNLHMFNISHNDFNSELPTGGFFNTIAPSSVAGNPSLCGSVVNKSCPSVLPKPIVLNPNSTSDSISSSLPPSNNHRRNRNILSISVLIAIGAAAFIIIGVISITILNFRVRSPTSSSSAAALALSIGDDFSHSSSPDANSGKLVVLSGELDFSTGAHALLNKDCELGRGGFGAVYHTVLRDGHSVAIKKLTVSSLVKSQEDFEREVRKFGIVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYRFLHEASDDYVLPWNERFDIILGTAKGLAHLHQSNTIHYNIKSSNILIDCNGQPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILILEVVTGKRPVEYMEDDVAVLCDMVRVAVEEGKAEECIDSKLRGNFPVEEAVPVLKLGLICTSHVPSNRPDMREMVKILEMIKCPSELQEELG 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5691314 5695606 + Carg00163-RA Car04g00987 146412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00987 925 Pfam Leucine rich repeat 436 495 IPR001611 GO:0005515
Car04g00987 925 Pfam Leucine rich repeat 197 255 IPR001611 GO:0005515
Car04g00987 925 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515
Car04g00987 925 Pfam Leucine rich repeat 364 421 IPR001611 GO:0005515
Car04g00987 925 Pfam Leucine rich repeat 272 327 IPR001611 GO:0005515
Car04g00987 925 ProSiteProfiles Protein kinase domain profile. 642 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00987 925 Pfam Protein tyrosine and serine/threonine kinase 644 910 IPR001245 GO:0004672|GO:0006468
Car04g00987 925 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Car04g00987 925 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00987 Car-Chr4:5691314 Car14g01318 Car-Chr14:11167356 0 dispersed
Car14g00008 Car-Chr14:55752 Car04g00987 Car-Chr4:5691314 0 wgd
Car15g00179 Car-Chr15:952707 Car04g00987 Car-Chr4:5691314 0 wgd
Car04g00097 Car-Chr4:542736 Car04g00987 Car-Chr4:5691314 0 wgd
Car04g00987 Car-Chr4:5691314 Car06g00162 Car-Chr6:982934 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88796 PF07714 PK_Tyr_Ser-Thr 2.80E-40 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00987 - - csv:101217762 1578.53