Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00988 ATGTCCTCCGAAGACATGAATGGGCTCAACTCCCACCTCGTCTTCCAAGAGGATGCCATGCCCTTCAATTGCGCCACCACGTCGCAGCGTCGCGTCGCCGACCCAGCTCCCAAAACCCGCGAGCTCTGCGGTTTCATGGACGACAAGCTCTTACCTGTCGACCGCGACCGATTTTTTGTTCACCAGGGCGAAGATTTTCGCCGGAGTGTGTTCGGTCATAGCCGGAATTGGAATGGTAATGAGAGTGCAAGAACTGGTAGTGGCAAAGGGTCGGATGAGGAAGATGATGACGATGAAGATGACGATGATGAAGATGAAGTCGATGACGGTGATGATGATGTTGTTGTTGAGGGGCTTGCTTCTTTGGATGATGTCAATAAGTGCACTAAAACTGCTAACCCTAACATCACCAACAAAGACATAAGCGATCAGAGTAGTGATGGGTTGAAGAATGGGACGAACAAATTGGGGAATGGGAAGCTTAAGCACCATTCATCGTTTGGTGGAACTCTGTTGGTCAAGGATGGCTTGGTTGGCTCTTCAGGCTGTAACACAGGAGCTACTCGGAACGATCCAAATGCGGTTACAATAGCAGAACCTGAAAATGCTTATTATTCCCAGTATTTGCAAGGCACTGAGGGATCTACTTCTGGGCAGAAGGATTTAGCTATAGAAAATGGATGTGGTTTTGGGAGAAGGGATGTTTCATTTTCGAGCGAACCTGAAGAGTCTCTGAGAGCAATTCTCACCGACCCTGTGACGGGCGCTCTCATGGACGATGCAATGATATTGCCGTGTGGGCATTCCTTTGGGAGTGGTGGAATACAACATGTTCTTAGAGTAAAATCTTGTTACTCATGTTCTCAGTCAGTTTCTGAAGATTCTATTGCTCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCCGCCGGGAAGAAGAACTGTTATTTTACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGATAAAGGTGGTTATGGTGATTCAACTCTCATGGATACTCCACGAGGTCGAGGTGTTCAGTTTCCTTTTGCAGTGACAGATAGGGTGATTATCAAGGGGAACAAGAGGACGCCGCAGCGTTTTGTGGGACGTGAGGCTGTCGTTACAGCACAGTGCTTGAATGGATGGTATGTGGTGAAAACACTAGACAATGCAGAGAGTGTAAAGTTGCAGTATCGATCGCTTGCGAGGGTTCCGAATGATGCAGCATCGAAGACGATAACAAAGAAGGTTGCACCGAATTGGCTTTAG 1281 47.78 MSSEDMNGLNSHLVFQEDAMPFNCATTSQRRVADPAPKTRELCGFMDDKLLPVDRDRFFVHQGEDFRRSVFGHSRNWNGNESARTGSGKGSDEEDDDDEDDDDEDEVDDGDDDVVVEGLASLDDVNKCTKTANPNITNKDISDQSSDGLKNGTNKLGNGKLKHHSSFGGTLLVKDGLVGSSGCNTGATRNDPNAVTIAEPENAYYSQYLQGTEGSTSGQKDLAIENGCGFGRRDVSFSSEPEESLRAILTDPVTGALMDDAMILPCGHSFGSGGIQHVLRVKSCYSCSQSVSEDSIAQNLSLQAAVQAFRREEELLFYRSPKRRRERFEQDKGGYGDSTLMDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTAQCLNGWYVVKTLDNAESVKLQYRSLARVPNDAASKTITKKVAPNWL 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5696977 5699853 + Carg00164-RA Car04g00988 146413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00988 426 ProSiteProfiles U-box domain profile. 244 316 IPR003613 GO:0004842|GO:0016567
Car04g00988 426 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 37 426 - -
Car04g00988 426 MobiDBLite consensus disorder prediction 128 156 - -
Car04g00988 426 MobiDBLite consensus disorder prediction 71 112 - -
Car04g00988 426 MobiDBLite consensus disorder prediction 92 112 - -
Car04g00988 426 MobiDBLite consensus disorder prediction 128 153 - -
Car04g00988 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 315 IPR013083 -
Car04g00988 426 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 37 426 - -
Car04g00988 426 SUPERFAMILY RING/U-box 239 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00988 - - - mcha:111015962 682.945
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00031 Car-Chr4:146835 Car04g00988 Car-Chr4:5696977 4.67E-06 dispersed
Car04g00030 Car-Chr4:141600 Car04g00988 Car-Chr4:5696977 3.52E-19 transposed
Car04g00098 Car-Chr4:547298 Car04g00988 Car-Chr4:5696977 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car05g01319 CST 1 276 Plant U-box Gene Family AT5G57035 65.0 1.0e-106 385.2
Car04g00988 . 175 426 Plant U-box Gene Family AT5G05230 55.0 1.1e-68 257.7
Car04g00098 . 202 416 Plant U-box Gene Family AT5G05230 52.3 2.4e-55 213.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g00988 Car_Chr04 FPKM 0.882051 0.0 1.125664 0.0 0.0 0.0 0.659507 1.307235 1.252189 2.104388