Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00988 ATGTCCTCCGAAGACATGAATGGGCTCAACTCCCACCTCGTCTTCCAAGAGGATGCCATGCCCTTCAATTGCGCCACCACGTCGCAGCGTCGCGTCGCCGACCCAGCTCCCAAAACCCGCGAGCTCTGCGGTTTCATGGACGACAAGCTCTTACCTGTCGACCGCGACCGATTTTTTGTTCACCAGGGCGAAGATTTTCGCCGGAGTGTGTTCGGTCATAGCCGGAATTGGAATGGTAATGAGAGTGCAAGAACTGGTAGTGGCAAAGGGTCGGATGAGGAAGATGATGACGATGAAGATGACGATGATGAAGATGAAGTCGATGACGGTGATGATGATGTTGTTGTTGAGGGGCTTGCTTCTTTGGATGATGTCAATAAGTGCACTAAAACTGCTAACCCTAACATCACCAACAAAGACATAAGCGATCAGAGTAGTGATGGGTTGAAGAATGGGACGAACAAATTGGGGAATGGGAAGCTTAAGCACCATTCATCGTTTGGTGGAACTCTGTTGGTCAAGGATGGCTTGGTTGGCTCTTCAGGCTGTAACACAGGAGCTACTCGGAACGATCCAAATGCGGTTACAATAGCAGAACCTGAAAATGCTTATTATTCCCAGTATTTGCAAGGCACTGAGGGATCTACTTCTGGGCAGAAGGATTTAGCTATAGAAAATGGATGTGGTTTTGGGAGAAGGGATGTTTCATTTTCGAGCGAACCTGAAGAGTCTCTGAGAGCAATTCTCACCGACCCTGTGACGGGCGCTCTCATGGACGATGCAATGATATTGCCGTGTGGGCATTCCTTTGGGAGTGGTGGAATACAACATGTTCTTAGAGTAAAATCTTGTTACTCATGTTCTCAGTCAGTTTCTGAAGATTCTATTGCTCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCCGCCGGGAAGAAGAACTGTTATTTTACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGATAAAGGTGGTTATGGTGATTCAACTCTCATGGATACTCCACGAGGTCGAGGTGTTCAGTTTCCTTTTGCAGTGACAGATAGGGTGATTATCAAGGGGAACAAGAGGACGCCGCAGCGTTTTGTGGGACGTGAGGCTGTCGTTACAGCACAGTGCTTGAATGGATGGTATGTGGTGAAAACACTAGACAATGCAGAGAGTGTAAAGTTGCAGTATCGATCGCTTGCGAGGGTTCCGAATGATGCAGCATCGAAGACGATAACAAAGAAGGTTGCACCGAATTGGCTTTAG 1281 47.78 MSSEDMNGLNSHLVFQEDAMPFNCATTSQRRVADPAPKTRELCGFMDDKLLPVDRDRFFVHQGEDFRRSVFGHSRNWNGNESARTGSGKGSDEEDDDDEDDDDEDEVDDGDDDVVVEGLASLDDVNKCTKTANPNITNKDISDQSSDGLKNGTNKLGNGKLKHHSSFGGTLLVKDGLVGSSGCNTGATRNDPNAVTIAEPENAYYSQYLQGTEGSTSGQKDLAIENGCGFGRRDVSFSSEPEESLRAILTDPVTGALMDDAMILPCGHSFGSGGIQHVLRVKSCYSCSQSVSEDSIAQNLSLQAAVQAFRREEELLFYRSPKRRRERFEQDKGGYGDSTLMDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTAQCLNGWYVVKTLDNAESVKLQYRSLARVPNDAASKTITKKVAPNWL 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5696977 5699853 + Carg00164-RA Car04g00988 146413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00988 426 ProSiteProfiles U-box domain profile. 244 316 IPR003613 GO:0004842|GO:0016567
Car04g00988 426 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 37 426 - -
Car04g00988 426 MobiDBLite consensus disorder prediction 128 156 - -
Car04g00988 426 MobiDBLite consensus disorder prediction 71 112 - -
Car04g00988 426 MobiDBLite consensus disorder prediction 92 112 - -
Car04g00988 426 MobiDBLite consensus disorder prediction 128 153 - -
Car04g00988 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 315 IPR013083 -
Car04g00988 426 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 37 426 - -
Car04g00988 426 SUPERFAMILY RING/U-box 239 316 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00031 Car-Chr4:146835 Car04g00988 Car-Chr4:5696977 4.67E-06 dispersed
Car04g00030 Car-Chr4:141600 Car04g00988 Car-Chr4:5696977 3.52E-19 transposed
Car04g00098 Car-Chr4:547298 Car04g00988 Car-Chr4:5696977 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00988 - - mcha:111015962 682.945