Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car04g00991 | ATGGAATTCCTCAATTCCTCTAATCAAATGGCTTCCTCTTCCAATCCCACCGCCCCTGTTCGCGGTTCCTTCCACCGTCGAGCCCATTCCGAGGTCCATTTCTGGATTCCCGACGATCTCGATCTCGTCTCGGACCCTTTCGATGGGCCTTCTTCTGGATTCGGAGATTTGGGCTTCGACGACGATCTCTTATGCACCTTAATGGACAGCGAGAAGATCGGATCCAAAATCGACAATGGGTCTTCGTCTTCGTTCAATCCTGAAGCGCCTGGTGGTGCTGCGGCGGAGAATGTCGAAGGCGAGAAAATCTCCCGTCCCAAGCACCGCCATAGCAATTCTGCTGATGGGTCTTGCATTATGGAGTCTATTGAGGCTAAGAAGGCCATGGATCCTGATAAGCTTGCTGAGTTGTGGACAATTGATCCTAAGCGTGCCAAGAGGATTTTAGCGAACAGACAGTCTGCTGCTCGGTCAAAAGAGAGGAAAGCTCGCTACATAATCGAACTTGAGAGAAAAGTTCAAAGGCTCAAGACCGAAGCAACAACTCTTTCTGCACAGCTCACATTGTACCAGAGAGATACGAACGAGCTTTCAACCGAAAACTCAGAGCTCAAACTTCATTTACAAGCTATGGAACAGCAAGCACGTTTACGCGACGCTCTAAATGAAGCTTTGATAAAGGAATTCGAACGGTTCAAGATCGCGACCGGAGAAGTAATAACACCTACAGATTCGTATAACTTCGGTATGCCTCAAGTTTCATTTCCCCAATCTTGCTTTTCACACCAACCACAACCTGGGCAACACAACCTGCCCCAAATTAATCCGTTCCATTCGAGTCTACCGTATCCGAACCAGTCTCTGTTTGTTGCATCCCATCAGCCACATGCCTTGATACAAATTCTTCAACAGGATCCTATTAGCCGATTGCAGGGTCTCGATTTCGATATCAATATCGATAGCAGAGGCACAGAAATAAAGCCAGAAGGCTCCTCCATATCCGTCAGTGAAAGTAGCAGCACATTTTAA | 1029 | 47.52 | MEFLNSSNQMASSSNPTAPVRGSFHRRAHSEVHFWIPDDLDLVSDPFDGPSSGFGDLGFDDDLLCTLMDSEKIGSKIDNGSSSSFNPEAPGGAAAENVEGEKISRPKHRHSNSADGSCIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIIELERKVQRLKTEATTLSAQLTLYQRDTNELSTENSELKLHLQAMEQQARLRDALNEALIKEFERFKIATGEVITPTDSYNFGMPQVSFPQSCFSHQPQPGQHNLPQINPFHSSLPYPNQSLFVASHQPHALIQILQQDPISRLQGLDFDINIDSRGTEIKPEGSSISVSESSSTF | 342 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 5708876 | 5711466 | + | Carg00167-RA | Car04g00991 | 146416 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car04g00991 | 342 | Pfam | bZIP transcription factor | 143 | 201 | IPR004827 | GO:0003700|GO:0006355 | |
| Car04g00991 | 342 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Car04g00991 | 342 | Coils | Coil | 159 | 214 | - | - | |
| Car04g00991 | 342 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 141 | 204 | IPR004827 | GO:0003700|GO:0006355 | |
| Car04g00991 | 342 | MobiDBLite | consensus disorder prediction | 76 | 116 | - | - | |
| Car04g00991 | 342 | MobiDBLite | consensus disorder prediction | 100 | 114 | - | - | |
| Car04g00991 | 342 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car02g00508 | Car-Chr2:3978344 | Car04g00991 | Car-Chr4:5708876 | 8.91E-101 | dispersed | |
| Car04g00991 | Car-Chr4:5708876 | Car06g01372 | Car-Chr6:9863981 | 8.13E-60 | dispersed | |
| Car09g00980 | Car-Chr9:6250698 | Car04g00991 | Car-Chr4:5708876 | 6.64E-11 | transposed | |
| Car04g00101 | Car-Chr4:554890 | Car04g00991 | Car-Chr4:5708876 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3321 | PF00170 | bZIP_1 | 5.40E-07 | CL0018 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car04g00991 | - | - | csv:101209388 | 504.212 |