Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00992 ATGGCCTTTTACTCGCCATTTTCCCTCCTTCCTCTCTTCTTCCTCTTCCTCCTCCTCCGCTCCACGGTTGCCGACTACGGCGGCTGGCAGAGCGGCCATGCCACCTTTTACGGTGGCGGTGACGCGTCTGGTACTATGGGTGGAGCTTGTGGGTATGGGAACTTGTACAGCCAAGGGTATGGCACCAACACGGTGGCGCTAAGCACGGCGCTGTTCAACAACGGCCTCAGCTGTGGGGCTTGCTTTGAAATGACTTGCACAAATGATCCCAAATGGTGCCTGCCCGGAACCATTAGGGTCACCGCCACCAACTTCTGCCCCCCCAACTTTGCCCTCCCCAACAACAACGGCGGCTGGTGCAACCCTCCTCTCCAGCACTTCGACATGGCTGAGCCTGCCTTCCTTCAGATCGCTCAATACCGTGCCGGAATCGTCCCCGTCTCCTTTCGGAGAGTGCCATGCATGAAGAAAGGTGGGGTGAGGTTCACAATTAACGGTCACTCCTATTTCAACCTTGTTTTGATCACGAACGTCGGCGGTGCTGGCGACGTCCACGCCGTGTCGATAAAGGGGTCTCGAACTGGATGGCAAGCGATGTCTAGAAATTGGGGCCAAAACTGGCAAAGCAACAACTACCTCAACGGTCAAGGCCTCTCCTTTCAGGTCACCCTTAGCGATGGTCGCACTCTCACGGCCTATAATCTCGTCCCGTCCAATTGGCAGTTCGGTCGGACCTATGAAGGCCCTCAATTTTAA 756 55.95 MAFYSPFSLLPLFFLFLLLRSTVADYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACFEMTCTNDPKWCLPGTIRVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGRTLTAYNLVPSNWQFGRTYEGPQF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5714487 5715800 + Carg00168-RA Car04g00992 146417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00992 251 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Car04g00992 251 Pfam Lytic transglycolase 64 149 IPR009009 -
Car04g00992 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Car04g00992 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00850 Car-Chr4:4936749 Car04g00992 Car-Chr4:5714487 2.82E-84 dispersed
Car04g00992 Car-Chr4:5714487 Car04g01707 Car-Chr4:9792612 3.16E-143 dispersed
Car15g00175 Car-Chr15:932957 Car04g00992 Car-Chr4:5714487 4.96E-151 wgd
Car04g00102 Car-Chr4:560825 Car04g00992 Car-Chr4:5714487 3.86E-123 wgd
Car04g00992 Car-Chr4:5714487 Car04g02757 Car-Chr4:21230065 1.26E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00992 - K20628 csv:101209633 488.034